AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial22g00972 ATGCTCAATATTTTCAATAAAAAGCTCCGGCTACTCTGCTCAAAACTCCGGTGGCCGGTACGCCGCCGTGCAAAGCCTAAAATTGTCATAAAAAGATTCAGAAAATCAAATTCAAGAAACCAAGATTCATTAATCAATTCAAATGGGTCAGCCACAATTCATCCAAAAACCGAAAACCCGATTCGAATTGCAACATTTAATGCTGCTTTATTCTCCATGGCACCAGCAGTCCCAGAGTTGACCAAAAAAGCTTCAACCTTTGACCATGGAGAAGATGATCAAGATCACACAAAGGCAAGTGCAAGTTTAAGTTTAAGTTCAAGGTCAAAGTCAACGGTTGACCGGCCCAAAAGTATACTAAAGCAATCACCTTTGCATTCAAGTTCAATTAGCAGTAGTTCAGAAAGTTTGACTAAACAGCAGAAATTTGCAAAGTCAAAGCTAAGGGTGTCGATAAATTTACCGGACAACGAGATATCGTTGAAGCGAAGCGGGCAGTTGAGCGTTGTTACGGATGAATCCGAATCCGACCCGAGTTTAAAAACTAGTGGTTCTAAGGGTATAAGCAGGATTTTGAAAGGAAAAGGTGTTTTGAGATCATATAATAGTTTTACTTGTAGTGAAGTTGAAAGTCAAAGGGGGAGTTTTAGGTCAACCAAGACTGTTTTTGAGGTTTTGAAAGAATTGGATGCTGATATTTTGGCTTTACAAGATGTGAAAGCTGAAGAAGAGAAAGATATGAAACCATTGTCTGATTTGGCTGCTGCTTTGGGTATGAATTATGTTTTTGCTGAGAGTTGGGCGCCTGAATATGGTAACGCGGTTTTGTCAAAATGGCCGATTAAAAGATCGAAAGTTCAGAAAATTTTCGACGATTCTGATTTCAGGAACGTTTTAAAGGCAACGATTGATGTTCCACAAACCGGAGAAGTTGACTTTCATTGTACACTTCTTGACCATCTTGATGAAAACTGGCGAATGAAGCAAATAAATGCAATAATTCAATCTAGTGACAGACCACACATATTAGCAGGAGGCATCAACTCTCTTGATGAAACAGACTACTCGGCCGAAAGATGGACCGACATTGTTAAGTATTATGAAGAAATGGGAAAACCGACACCAAAAGTTGAAGTGATGAAGTACTTAAAGAGCAAGCAGTATACCGATGCTAAGGATTTTGCAGGCGAATGTGAATCTGTTGTCATTATTGCTAAAGGCCAAAATGTTCAAGGTACATGCAAATATGGTACTAGAGTAGATTATATATTGGTGTCGCCCGATTCACCCTACAAGTTTGTTCCCGGATCGTATATGGTTTTATCATCAAAAGGTACCTCTGACCATCACATAGTCAAAGTTGAAGTAACAAAGGTAGACGAATCTGCTCAACAACAACAACAGCCGTACGTTAGAAGACATCGACGTCCAAAACAAAAAGTTGTGAAGATAACGAATTCTAATTCATCAAAGGGTGTATGGAAAATGCAAACTTTAGATAGATAG 1506 39.04 MLNIFNKKLRLLCSKLRWPVRRRAKPKIVIKRFRKSNSRNQDSLINSNGSATIHPKTENPIRIATFNAALFSMAPAVPELTKKASTFDHGEDDQDHTKASASLSLSSRSKSTVDRPKSILKQSPLHSSSISSSSESLTKQQKFAKSKLRVSINLPDNEISLKRSGQLSVVTDESESDPSLKTSGSKGISRILKGKGVLRSYNSFTCSEVESQRGSFRSTKTVFEVLKELDADILALQDVKAEEEKDMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRSKVQKIFDDSDFRNVLKATIDVPQTGEVDFHCTLLDHLDENWRMKQINAIIQSSDRPHILAGGINSLDETDYSAERWTDIVKYYEEMGKPTPKVEVMKYLKSKQYTDAKDFAGECESVVIIAKGQNVQGTCKYGTRVDYILVSPDSPYKFVPGSYMVLSSKGTSDHHIVKVEVTKVDESAQQQQQPYVRRHRRPKQKVVKITNSNSSKGVWKMQTLDR 501
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial22g00972 501 MobiDBLite consensus disorder prediction 99 136 - -
Bial22g00972 501 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 16 455 IPR051916 GO:0005783(PANTHER)|GO:0006506(PANTHER)
Bial22g00972 501 MobiDBLite consensus disorder prediction 86 136 - -
Bial22g00972 501 FunFam Endonuclease-exonuclease-phosphatase family protein 207 459 - -
Bial22g00972 501 Pfam Endonuclease-Exonuclease-phosphatase family 217 449 IPR005135 GO:0003824(InterPro)
Bial22g00972 501 MobiDBLite consensus disorder prediction 165 185 - -
Bial22g00972 501 Coils Coil 226 246 - -
Bial22g00972 501 Gene3D Endonuclease-exonuclease-phosphatase 200 459 IPR036691 -
Bial22g00972 501 SUPERFAMILY DNase I-like 218 456 IPR036691 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial22g00972 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
363662 Bial12g02778 Bial22g00972
374185 Bial22g00972 Bial24g02622
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr15:66452858 Bial22g00972 Bial-Chr22:9424102 transposed
Bial Bial-Chr10:13838816 Bial22g00972 Bial-Chr22:9424102 wgd
Bial Bial-Chr12:57830879 Bial22g00972 Bial-Chr22:9424102 wgd
Bial Bial-Chr22:9424102 Bial24g02622 Bial-Chr24:56992173 wgd