AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial24g02181 ATGAAGAACCCATCAAGCGATGGAAATGGTGATGCAAATGCAAATGGGATCATAAAACATAAGAGGAAGTGCAGAGATGTTGTGTTTCTTGTTCTGTTTATAGCTTTCTGGATTGCCATGATTGTTAACTCCAGCTTTGGATTCAACCAAGGAAACCCATGGAGGCTAAACTTTGGATTAGATTACAAAGGAAATGTATGTGGAGGCAAACACAAAGATTTCAACCTTCGCGAATTGGAACTCAAATATTATGTTAATCCTAATCAAGTTTACCAAAGTGGAATAAAAAACAGTGGAGTGCAACTATCTAATGCACGGACAATATGTTTAATGGATTGCCCGATACCATCAGAAGATTCTTTAAATTGGGTTTGCGATTATCCGGAGGGAGATATTCGTCTTTCGTTAGATGATTGGATTGATATGAATTATGATTATTTTGCTGACCTCACTCCTGAATTAAGAAACACTTCTCTTCAACTTCAAGGGCCTTGTTACCCTGTCATTTTTCCTAGCGTAAACGTTTATTGGAGTTGCCAATTTATTGATCGTCCATCGAACGTGTCGTTAACACATTGGAAGCAAATGAATGGAGTTACTATTAATGATGATATGGTCATAGATAAATCTATTCACAAGTCCATCAATGCACGGTCTTCGGTATTGAAGAGATATGTTGCTGATGTTGGAAAATCATGGCCCGTGTTGATTGTCTGTGGAGGACTCTTGCCTTTACTTTTATCAATGTTATGGCTTTTAATGATTCGACATTTTGTAGCCGCGATGCCATGGGTTACAGTGTTTTTATTTAATGGCCTCATAATATCAGTCACAATGTTCTACTACTTGAAAGCTGGATGGATCGGAAACGATGCTATCTCGCCCATCATTGGTGAACATGATCCATACTATCATGTTTCCGCAAGGGAGCTACATCATATCCGTGCAGCTGCGTTTCTCATGACTTGTGTTATGATTGTTGCGGTCCTATCATCTATAGCTATTGTTAGGCGGATTCTTATGGCAACCTCAGTACTCAAGGTTGCAGCAAAGGTTATTGGAGAAGTTGATGCTCTAATAATATTCCCTGTTATACCATACACAATCCTCACAATTTTTTACATGTTTTGGTTATCGGCGGCTCTAAATCTTTTTAGCTCGGGTCAAATAGTCAACAATGACTGCAACACGAATTGCTGTGCTTATGATCTTAAAGCCAAACGAGTGAATTGTAACGATTGTTGCGGCTATAGTATCCATTACACCCCGCATATTGGAGCTTCAATATTATTCCACTTGTTTGGATGCTATTGGGCCACTCAGTTTATTATTGCGTGTTCGTCAACTGTGATTGCTGGTTCTGTAGCTTCATATTATTGGGCCCGTGGGGAATCTTCGGCAACGATTCCATTTCTTCCGGTTTTTTCATCAATGAAGCTACTCATGAGATATAGCTTAGGGTCGGTGGCGATCGGGTCCTTGGTTGTGTCGTTTGTTGAGTCGACTCGGTTCATACTTGAGGCCATACGCCGGAGACTAAAAGTTGCTGACATCATGCCTGAAAGTTGGATTAAGCGAATGATGTTTTATACTTCCCGATTTTGCTTAAAATGCATTGAGTTGACCGTAAAATGTGTGAACCGCAATGCATATATTATGATTGCTATAACTGGAAAAGGGTTCTTTAGAGCTTCGGAAATGGCGACGGATTTGATAATTAGTAATATTCTGCGTATAGGCCGAGTAAATGTAATCGGGGACGTTATTCTCTTTCTTGGAAAGCTATGTGTGAGTCTTGCAAGTGCACTTTTTGCATTTCTCATGTTGGATACTCACAAATACAAATCATCCCACAACAAGATCACATCCCCATTACTTCCTGTGCTGGCGTGTTGGGGGCTCGGGTATGTGGTGGCTACCCTTTTCTTTGCGGTTGTTGAAATGTCGATTGATACGATTATACTTTCGTACTGTCAAGATTCGGAGGAACATCAAGGGACCGCGCATTATGCGCCTTCACTTTTGATTGAAACATTTGATGAACAGAATGAGTTGCCAAGAATTGGACAATGA 2073 40.23 MKNPSSDGNGDANANGIIKHKRKCRDVVFLVLFIAFWIAMIVNSSFGFNQGNPWRLNFGLDYKGNVCGGKHKDFNLRELELKYYVNPNQVYQSGIKNSGVQLSNARTICLMDCPIPSEDSLNWVCDYPEGDIRLSLDDWIDMNYDYFADLTPELRNTSLQLQGPCYPVIFPSVNVYWSCQFIDRPSNVSLTHWKQMNGVTINDDMVIDKSIHKSINARSSVLKRYVADVGKSWPVLIVCGGLLPLLLSMLWLLMIRHFVAAMPWVTVFLFNGLIISVTMFYYLKAGWIGNDAISPIIGEHDPYYHVSARELHHIRAAAFLMTCVMIVAVLSSIAIVRRILMATSVLKVAAKVIGEVDALIIFPVIPYTILTIFYMFWLSAALNLFSSGQIVNNDCNTNCCAYDLKAKRVNCNDCCGYSIHYTPHIGASILFHLFGCYWATQFIIACSSTVIAGSVASYYWARGESSATIPFLPVFSSMKLLMRYSLGSVAIGSLVVSFVESTRFILEAIRRRLKVADIMPESWIKRMMFYTSRFCLKCIELTVKCVNRNAYIMIAITGKGFFRASEMATDLIISNILRIGRVNVIGDVILFLGKLCVSLASALFAFLMLDTHKYKSSHNKITSPLLPVLACWGLGYVVATLFFAVVEMSIDTIILSYCQDSEEHQGTAHYAPSLLIETFDEQNELPRIGQ 690
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial24g02181 690 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 15 680 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Bial24g02181 690 Pfam Plasma-membrane choline transporter 320 662 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial24g02181 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
184671 Bial12g02319 Bial24g02181
189631 Bial4g03276 Bial24g02181
363313 Bial12g02319 Bial24g02181
374392 Bial24g02181 Bial4g03276
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr14:54195462 Bial24g02181 Bial-Chr24:52333324 dispersed
Bial Bial-Chr24:52333324 Bial6g02325 Bial-Chr6:64297312 dispersed
Bial Bial-Chr12:53467912 Bial24g02181 Bial-Chr24:52333324 wgd
Bial Bial-Chr24:52333324 Bial4g03276 Bial-Chr4:75184511 wgd