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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial24g02223 ATGGCGTCTCATTCCTTAACTTCTTCTTCTACTTCTAATTTCAGACTCGCACTTCACTTATCCTCCAAACCCCAATTCAGATCATCTAATCGATTTCAATTCAGTCTACCCATCACCATAAGAAGCTGTTCATCGATTCGAGCTATGGGTTCTTCGTCTTCGTCATCGCAGAAACCAGACACCACCACCAATCAACAAGAGGCAGGAAACAAGGATTATAAATCTGTTAGTGACCAAGAATGGAAGAAGAAGCTAACCGGAGAACAGTTTTATGTAACTCGACAAAAGGGAACTGAAAGGGCTTTCACCGGGGAATACTGGAACACGAAGACCCCCGGGACTTACCATTGCATCTGCTGTGACACTCCACTATTCGAGTCAAGCACGAAATTTGATAGTGGAACGGGTTGGCCGTCATATTATGAGCCGATAGGAAATAATGTCAAGTCAAAACTCGATCTTTCAATCATATTTATGCCCCGACAAGAAGTTCTATGTGCAGCTTGTGATGCTCATCTTGGTCATGTGTTTGACGATGGTCCTCCTCCCACTGGCAAACGTTATTGCATTAACAGTGCTTCTCTGAAATTGAACCCAAAGTAG 603 43.45 MASHSLTSSSTSNFRLALHLSSKPQFRSSNRFQFSLPITIRSCSSIRAMGSSSSSSQKPDTTTNQQEAGNKDYKSVSDQEWKKKLTGEQFYVTRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYEPIGNNVKSKLDLSIIFMPRQEVLCAACDAHLGHVFDDGPPPTGKRYCINSASLKLNPK 200
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial24g02223 200 MobiDBLite consensus disorder prediction 49 75 - -
Bial24g02223 200 FunFam Peptide methionine sulfoxide reductase MsrB 70 200 - -
Bial24g02223 200 NCBIfam peptide-methionine (R)-S-oxide reductase MsrB 76 199 IPR002579 GO:0033743(InterPro)
Bial24g02223 200 PANTHER METHIONINE SULFOXIDE REDUCTASE 43 199 IPR028427 GO:0005737(PANTHER)|GO:0006979(InterPro)|GO:0016671(InterPro)|GO:0030091(InterPro)|GO:0033743(PANTHER)
Bial24g02223 200 Pfam SelR domain 80 198 IPR002579 GO:0033743(InterPro)
Bial24g02223 200 Gene3D Peptide methionine sulfoxide reductase. 56 200 - -
Bial24g02223 200 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 78 200 IPR002579 GO:0033743(InterPro)
Bial24g02223 200 MobiDBLite consensus disorder prediction 49 72 - -
Bial24g02223 200 SUPERFAMILY Mss4-like 76 199 IPR011057 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial24g02223 K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
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Event-related genes

Select Gene_1 Gene_2 Event_name
184698 Bial12g02364 Bial24g02223
363360 Bial12g02364 Bial24g02223
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:18867018 Bial24g02223 Bial-Chr24:52836712 dispersed
Bial Bial-Chr24:52836712 Bial4g01641 Bial-Chr4:20728301 dispersed
Bial Bial-Chr12:53974487 Bial24g02223 Bial-Chr24:52836712 wgd