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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial24g02234 ATGGCTGAAATAACCGGCGAATCTTCAGCAGCAGCGGCTGATGATGATGATGATGCAAACTCTGATGAAATGTATCTGCAAGACATGTTCTCCAATTTTAACTTGAATCCTGCGGCTGATGACTCTTCCATCTCATTATACAATCCCTTCGATTTCTTTGCCCCAATTTTGCTCAACGTTTATCATGTGGATGCCAATAATAATAATAATAATAATAATAATCGTAGGAGGAGAAGTAAGTATGCTATCCAGGGGAGAAAGCAGATGAATGAGAGAGCTTCCAAAGCACAAAGTCAAGATAGAATTAAACGAACTGTATATGTGTCCGACATTGATCGTAATGTTTTGGAATGTCGAGTTTGCGGCGATCCGCATTCACGTCTCCGCTTTGCGTTCGTGGAATTTGCTGATGAGAATTCTGCAAGATCAGCTCTTGATCTTAGTGGCATAATGTTGGGGTTCTCTCAAGTTAAGGTTTTGCCTTCGAAAACTGCAATACTTCCTGTCAATTCAACTTTACTTCCCAAAGTATGA 534 40.26 MAEITGESSAAAADDDDDANSDEMYLQDMFSNFNLNPAADDSSISLYNPFDFFAPILLNVYHVDANNNNNNNNNRRRRSKYAIQGRKQMNERASKAQSQDRIKRTVYVSDIDRNVLECRVCGDPHSRLRFAFVEFADENSARSALDLSGIMLGFSQVKVLPSKTAILPVNSTLLPKV 177
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial24g02234 177 SUPERFAMILY RNA-binding domain, RBD 86 165 IPR035979 GO:0003676(InterPro)
Bial24g02234 177 Gene3D - 109 160 IPR012677 -
Bial24g02234 177 PANTHER SERINE-ARGININE-RICH SPLICING FACTOR 69 176 - -
Bial24g02234 177 Pfam RNA recognition motif 115 153 IPR000504 GO:0003723(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial24g02234 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
184705 Bial12g02377 Bial24g02234
189645 Bial4g03417 Bial24g02234
363374 Bial12g02377 Bial24g02234
368943 Bial16g02813 Bial24g02234
374406 Bial24g02234 Bial4g03417
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr24:52991689 Bial2g00689 Bial-Chr2:7560945 dispersed
Bial Bial-Chr12:54107587 Bial24g02234 Bial-Chr24:52991689 wgd
Bial Bial-Chr16:72200217 Bial24g02234 Bial-Chr24:52991689 wgd
Bial Bial-Chr24:52991689 Bial4g03417 Bial-Chr4:77908760 wgd