AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial24g02335 ATGAGTCAAATCAGCAGAAAAAAGTGGGGGTTAAACCTGAAACGAACAATAATATGGCGGGTAGCTTTCCTCCGGCGATGTGGTCGATCCTTTTGGCGCCAAATTCTGGCGTGTTGGATCGGAAAATCAATCCGGTACCGGCAGCTGTTGAATAATAATAATAATAATACTGGGTCGATTCCGTTGATTCCGACGTATCATCGGGAGGCGGAGAGGACGACGGCGATTGATATGGCCACCGTCTGCCACCAGTTTCCGTCAGGGGAGTTGACGGCGTCAAGCGGCGAGATGACGTCATCTTGCGGTGGTGGTGATGAGCGTGATCAAGATGCGTCTGATTTGGTGGCATTGAAGATTTGTTTGTTGGGTGATCAACATATTGGCAAAACAAGCTTCTTGGCAAAATATGTTGGGAAAGAAAAGAATCAAGAAGAATTACCAGCTAAAGGAATACATCACATGGATAAAACCTTATGTGTCAGAGGAGCTAGAATCTCTTACAACATATGGGAAGTTAGTGGTGATGCATTGTATCCGGATGGTGATTCAAGGACTTTGATTCCTACAGCTTGTAAGGATTCTGTAGCGATCCTGTTCATGTTTGATCTAACAAGTCGCCGAACTCTTAACAGTGTTATCAACTGGCATAAGCAAGCTAGGAACTATAATCAGACCGCGATTCCAGTAATGATCGGGAGCAAATTTGATGAGTTTGTCCAGCTTCCGTTAGATTTGCAGTGGACGATCTCAAGTGAGGCACGAGCATACGCAAAGGCCATAAACGCGACTTTGTTCTTCTCAAGCGCGTCTTACAACATAAACGTAAATAAAATCTTCAAGTTTGTAACTGCAAAGCTATTTGATTTATCGTGGACTCTGGAACGTAATCTTACCGTTGGCGAGCCTATTATTGATTTCTAG 921 44.08 MSQISRKKWGLNLKRTIIWRVAFLRRCGRSFWRQILACWIGKSIRYRQLLNNNNNNTGSIPLIPTYHREAERTTAIDMATVCHQFPSGELTASSGEMTSSCGGGDERDQDASDLVALKICLLGDQHIGKTSFLAKYVGKEKNQEELPAKGIHHMDKTLCVRGARISYNIWEVSGDALYPDGDSRTLIPTACKDSVAILFMFDLTSRRTLNSVINWHKQARNYNQTAIPVMIGSKFDEFVQLPLDLQWTISSEARAYAKAINATLFFSSASYNINVNKIFKFVTAKLFDLSWTLERNLTVGEPIIDF 306
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial24g02335 306 Pfam Ras family 118 285 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Bial24g02335 306 ProSiteProfiles small GTPase Rab1 family profile. 108 306 - -
Bial24g02335 306 FunFam Septum-promoting GTP-binding protein 1 107 296 - -
Bial24g02335 306 PRINTS Transforming protein P21 ras signature 117 138 - -
Bial24g02335 306 PRINTS Transforming protein P21 ras signature 224 237 - -
Bial24g02335 306 PRINTS Transforming protein P21 ras signature 264 286 - -
Bial24g02335 306 PRINTS Transforming protein P21 ras signature 158 180 - -
Bial24g02335 306 Gene3D - 106 296 IPR027417 -
Bial24g02335 306 PANTHER - 115 305 - GO:0003924(PANTHER)|GO:0005525(PANTHER)
Bial24g02335 306 SMART rab-sub-5 117 289 - -
Bial24g02335 306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 297 IPR027417 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial24g02335 K07976 Rab family, other
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Event-related genes

Select Gene_1 Gene_2 Event_name
184758 Bial12g02485 Bial24g02335
363463 Bial12g02485 Bial24g02335
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr20:68162653 Bial24g02335 Bial-Chr24:54045524 dispersed
Bial Bial-Chr24:54045524 Bial8g02968 Bial-Chr8:71565636 dispersed
Bial Bial-Chr12:55151939 Bial24g02335 Bial-Chr24:54045524 wgd