AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bial24g02507 | ATGAAACAACAAAACATGTCAGAAGATAACACTAATATACCTGACACCGAGGCGTTGACTGAGAACTTAATTCCAGTTGAAGTTCAAGTTCCCGAGAATGAATATGTGGAAGAACACGGTGATGAAGCAGTAGAGCCTCAAGAAAATGATGAAGAAGACCAAGTTGGTGCTGAGGTGGCGGAGGGTGGTCCCGCTGCAGAAGGTGTTGTGGAACAAAAATGGCCAGGGTGGCCCGGAGAGAATGTTTTCAGGATATTGGTTCCCGCACATAAAGTCGGTGGCATCATTGGTCGTAAGGGAGAGTACATAAAGAAAACTTGTGAAGAAACTCGGGCTCGCATTAAGATTCTTGATGGTCCTCCTGGTACTAATGAAAGAGCTGTGTTGATATCTGCAAAAGAAGAACCAGAGGTTCCTATATCTCCTGCAATGGATGGTTTGTTGAAGGTTCATCAACGAGTCCTTGATGCTGACAAGGATTCTGCTCATGGCCCGCCTGGTGGGCCCGCCTCTATTTCTACAAGGCTACTTGTGGCGGGTGCACAAGGTGGAAGTTTGATAGGGAAGCAGGGTGCCACCATAAAGACCATTCAAGATTCTTCAAATTGTAAAATTCGGGTTGTTGGAGAAAACCTCCCAGTTTTTGCTCTACCTGATGACAGTGTTGTTGAGATACAAGGGGACCCAACTGGTGTGTGCACGGCTTTGGAACTAATCGCAACTCATTTAAGAAAATTTTTAGTTGATCGAAGCGTTATCAGTATATTTGAGTCGCAAATGCAAAATGCTCGTCCAAATCAAGAGATGCCACCTCACCAACCTTGGGGAGCTCCATCACCTCAAGGTTTCCTAGGTGGCGGCCCTAGTTTTGGGCCAAATTTTGGACCCAATCAGTTTATGCCACCTCAGCACCAGTTTGACAACTACTATCCACGAGCAGATTTGCCTCCACCAATGGATAAACAGCCTCGCCAGGGTCCACCTTATGGTAGGGATCCAACCACCGGACCGCCTCACTCTTCAACCGTGCAGCCACAACAGTCGATGGTCACAAAGGTCTCACAAAACATGCAAATCCCTCTTTCCTATGCTGATGCTGTAATTGGTACCTCGGGGACTAATATCAGTTATATAAGACGGGCCAGCGGGGCCACCATTGCGATACAAGAAACACGGGGCGTTCCTGATGAAATGACAGTTGAGATTAACGGGTCAGCGTCACAAGTTCAGACAGCTCAGCAGTTGATACAGAATTTTGTTGCAGAAGCTGCAACTGCGGCTCAAAATGCTACCGCAGCACCACCTGCTCAAGGCGGCTATAACGCTCCTTATCCTGGCGGTTACCAATCTCAACCGCCTCCTGCCACCCACGCACCGCCTGCTGCTGAGTATGGTGGAGCTGTGTACGGAGGGAATTACGGGTATTGA | 1428 | 48.18 | MKQQNMSEDNTNIPDTEALTENLIPVEVQVPENEYVEEHGDEAVEPQENDEEDQVGAEVAEGGPAAEGVVEQKWPGWPGENVFRILVPAHKVGGIIGRKGEYIKKTCEETRARIKILDGPPGTNERAVLISAKEEPEVPISPAMDGLLKVHQRVLDADKDSAHGPPGGPASISTRLLVAGAQGGSLIGKQGATIKTIQDSSNCKIRVVGENLPVFALPDDSVVEIQGDPTGVCTALELIATHLRKFLVDRSVISIFESQMQNARPNQEMPPHQPWGAPSPQGFLGGGPSFGPNFGPNQFMPPQHQFDNYYPRADLPPPMDKQPRQGPPYGRDPTTGPPHSSTVQPQQSMVTKVSQNMQIPLSYADAVIGTSGTNISYIRRASGATIAIQETRGVPDEMTVEINGSASQVQTAQQLIQNFVAEAATAAQNATAAPPAQGGYNAPYPGGYQSQPPPATHAPPAAEYGGAVYGGNYGY | 475 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bial24g02507 | 475 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Bial24g02507 | 475 | Pfam | KH domain | 83 | 135 | IPR004088 | GO:0003723(InterPro) | |
| Bial24g02507 | 475 | Pfam | KH domain | 355 | 417 | IPR004088 | GO:0003723(InterPro) | |
| Bial24g02507 | 475 | Pfam | KH domain | 174 | 239 | IPR004088 | GO:0003723(InterPro) | |
| Bial24g02507 | 475 | CDD | KH-I-PEPPER-rpt1-like | 80 | 148 | - | - | |
| Bial24g02507 | 475 | MobiDBLite | consensus disorder prediction | 316 | 334 | - | - | |
| Bial24g02507 | 475 | MobiDBLite | consensus disorder prediction | 43 | 57 | - | - | |
| Bial24g02507 | 475 | MobiDBLite | consensus disorder prediction | 33 | 58 | - | - | |
| Bial24g02507 | 475 | Gene3D | K Homology domain, type 1 | 340 | 428 | IPR036612 | GO:0003723(InterPro) | |
| Bial24g02507 | 475 | CDD | KH-I-PEPPER-rpt2-like | 173 | 244 | - | - | |
| Bial24g02507 | 475 | ProSiteProfiles | Type-1 KH domain profile. | 80 | 147 | - | - | |
| Bial24g02507 | 475 | PANTHER | KH DOMAIN CONTAINING RNA BINDING PROTEIN | 48 | 425 | - | GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER) | |
| Bial24g02507 | 475 | Gene3D | - | 80 | 249 | - | - | |
| Bial24g02507 | 475 | MobiDBLite | consensus disorder prediction | 437 | 459 | - | - | |
| Bial24g02507 | 475 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 164 | 250 | IPR036612 | GO:0003723(InterPro) | |
| Bial24g02507 | 475 | ProSiteProfiles | Type-1 KH domain profile. | 171 | 239 | - | - | |
| Bial24g02507 | 475 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 344 | 423 | IPR036612 | GO:0003723(InterPro) | |
| Bial24g02507 | 475 | ProSiteProfiles | Type-1 KH domain profile. | 352 | 416 | - | - | |
| Bial24g02507 | 475 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Bial24g02507 | 475 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 72 | 134 | IPR036612 | GO:0003723(InterPro) | |
| Bial24g02507 | 475 | SMART | kh-6 | 79 | 159 | IPR004087 | GO:0003676(InterPro) | |
| Bial24g02507 | 475 | SMART | kh-6 | 351 | 421 | IPR004087 | GO:0003676(InterPro) | |
| Bial24g02507 | 475 | SMART | kh-6 | 170 | 244 | IPR004087 | GO:0003676(InterPro) | |
| Bial24g02507 | 475 | MobiDBLite | consensus disorder prediction | 287 | 348 | - | - | |
| Bial24g02507 | 475 | CDD | KH-I-PEPPER-like-rpt3 | 352 | 420 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bial24g02507 | K21444 | poly(rC)-binding protein 3/4 |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 184860 | Bial12g02667 | Bial24g02507 | |
| 363572 | Bial12g02667 | Bial24g02507 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Bial | Bial-Chr13:68395747 | Bial24g02507 | Bial-Chr24:55923899 | dispersed | |
| Bial | Bial-Chr16:22928630 | Bial24g02507 | Bial-Chr24:55923899 | dispersed | |
| Bial | Bial-Chr1:69265741 | Bial24g02507 | Bial-Chr24:55923899 | dispersed | |
| Bial | Bial-Chr23:7544876 | Bial24g02507 | Bial-Chr24:55923899 | dispersed | |
| Bial | Bial-Chr24:55923899 | Bial4g01836 | Bial-Chr4:24841713 | dispersed | |
| Bial | Bial-Chr12:56913266 | Bial24g02507 | Bial-Chr24:55923899 | wgd |