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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g02922 ATGAACACACACTTGAAGACGGTGAAGTTGACACTGAAAGGGAAAAACCCTGTAACCCTTGACCACTTGAGCGTGAGAGGCAATAATATTCGTTACTACATACTTCCCGACAGCTTGAATTTGGAGACTTTGCTAGTTGAAGAGACGCCTAGAGTCAAGCCCAAGATGCCAACTGCAGGGAAGCCTGTGGGACGTGGTCGGGGCCGAGGACGAGGTCGTGGACGTGGTGGTCGCGGACGTTAG 243 51.85 MNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKMPTAGKPVGRGRGRGRGRGRGGRGR 80
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g02922 80 Gene3D - 1 50 - -
Bial4g02922 80 FunFam Small nuclear ribonucleoprotein Sm D1 15 47 - -
Bial4g02922 80 MobiDBLite consensus disorder prediction 50 80 - -
Bial4g02922 80 Pfam LSM domain 1 34 IPR001163 -
Bial4g02922 80 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 77 IPR027141 GO:0000243(PANTHER)|GO:0000387(PANTHER)|GO:0003723(PANTHER)|GO:0005682(PANTHER)|GO:0005685(PANTHER)|GO:0005686(PANTHER)|GO:0005687(PANTHER)|GO:0005689(PANTHER)|GO:0006396(InterPro)|GO:0034715(PANTHER)|GO:0034719(PANTHER)|GO:0071011(PANTHER)|GO:0071013(PANTHER)|GO:0097526(PANTHER)
Bial4g02922 80 SUPERFAMILY Sm-like ribonucleoproteins 1 79 IPR010920 -
Bial4g02922 80 MobiDBLite consensus disorder prediction 66 80 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g02922 K11087 small nuclear ribonucleoprotein D1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr4:66661713 Bial4g02922 Bial-Chr4:66926818 dispersed
Bial Bial-Chr4:66926818 Bial5g00998 Bial-Chr5:14253079 transposed
Bial Bial-Chr4:66926818 Bial17g00187 Bial-Chr17:3775218 transposed