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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03009 ATGGGTGACAGTCAGTACTCCTTCTCACTCACTACCTTCAGTCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTCTTACGGCGGTTGGATCGGGACAAACTTCATTGGGAATAAAAGGTAGCTTCTTTTGCAAGATTACTTCTTCTAATGGTGTCGTGATTGCAACTGAAAAGAAGCTCCCGTCCATTCTAGTCGATGAGACATCGGTGCAAAAGATCCAGGTTTTGACTCCTAATATTGGAGTTGTTTACAGTGGGATGGGGCCTGATTCACGAGTTTTGGTCAGAAAGAGTAGGAAGCAGGCAGAGCAATACAATCTGCTATACAAGGAACCGATCCCTGTTACACAACTTGTAAGGGAAACTGCTGCTGTTATGCAAGAATTTACTCAATCAGGATTTGAAGGACAGATATCCGGCAAGAACATCGAGATTGGTGTTATCGAGGCTGACAGAACATTCAGGCAAGCTTTTGAGTACTACATAGCTGGATGTAAATAA 501 43.51 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKGSFFCKITSSNGVVIATEKKLPSILVDETSVQKIQVLTPNIGVVYSGMGPDSRVLVRKSRKQAEQYNLLYKEPIPVTQLVRETAAVMQEFTQSGFEGQISGKNIEIGVIEADRTFRQAFEYYIAGCK 166
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03009 166 Pfam Proteasome subunit 46 151 IPR001353 GO:0005839(InterPro)|GO:0051603(InterPro)
Bial4g03009 166 Pfam Proteasome subunit A N-terminal signature 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Bial4g03009 166 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 5 133 IPR029055 -
Bial4g03009 166 PANTHER PROTEASOME SUBUNIT ALPHA-BETA 4 134 IPR050115 GO:0010498(PANTHER)|GO:0019773(PANTHER)
Bial4g03009 166 SMART Proteasome-A-N-2 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Bial4g03009 166 ProSitePatterns Proteasome alpha-type subunits signature. 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Bial4g03009 166 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 137 IPR029055 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03009 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
189182 Bial4g03009 Bial16g02440
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr4:69051406 Bial4g03014 Bial-Chr4:69090148 proximal
Bial Bial-Chr16:63783113 Bial4g03009 Bial-Chr4:69051406 wgd