AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03017 ATGTCTAATGGTGCCAAAGTCATCCTCTCGTCTCATCTGGGACGACCAAAGGGTGTTACACCAAAATACAGCTTGAAGCCACTTGTGCCTAGACTATCTGAGCTTCTTGGAGTTGAGGTCAAGATGGCAGATGATTGCATTGGTCCCGAGGTTGAGAAATTGGTGGCTGCACTCCCAGAAGGCGGTGTTTTGCTTCTTGAAAATGTCAGATTTTACAAAGAAGAAGAGAAAAACGACCCCGAGTTTGCAAAGAAGCTTGCATCACTAGCAGACTTATATGTCAATGATGCATTCGGTACTGCACATAGAGCACATGCATCCACTGAAGGTGTTGCAAAGCACTTGAAGCCAGCTGTTGCTGGATACCTTATGCAAAAGGAGCTTGATTACCTTGTTGGAGCTGTATCCAATCCCACTAAACCATTTGCTGCGATTGTTGGTGGGTCAAAGGTTTCAAGTAAAATCGGTGTAATCGAGTCACTACTAGAAAAAGTCAACATTCTTGTGCTCGGTGGAGGTATGATCTTTACCTTTTACAAAGCTCAAGGGTACAAAGTTGGATCATCACTTGTGGAAGAAGATAAACTTGATCTTGCCACATCACTTCTTGAAAAGGCTAAGGCTAAAGGGGTGTCTCTTTTACTCCCGTCTGATGTTGTAATTGCTGATAAGTTTGCTGCTGACGCTAACAGCAAGGTTGTTCCTGCAAATGAAATTCCAGATGGCTGGATGGGATTGGATATTGGACCGGACTCTATCAAGTCGTTTAGTGAAACTTTGGATACTACCAAAACTGTCATCTGGAACGGGCCTATGGGCGTGTTTGAGTTTGAGAAGTTTGCTGCTGGAACAGAGGCAATTGCTAAGAAACTGGCTGAACTTAGCGGAAAGGGGGTTACAACCATCATTGGAGGTGGTGATTCGGTTGCAGCCGTGGAGAAGGTTGGGTTAGCCGACAAGATGAGCCACATCTCGACTGGTGGCGGTGCTAGCTTGGAGCTTCTAGAAGGGAAGACACTGCCTGGAGTGCTTGCTTTGAATGATGCATGA 1050 45.52 MSNGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMADDCIGPEVEKLVAALPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKHLKPAVAGYLMQKELDYLVGAVSNPTKPFAAIVGGSKVSSKIGVIESLLEKVNILVLGGGMIFTFYKAQGYKVGSSLVEEDKLDLATSLLEKAKAKGVSLLLPSDVVIADKFAADANSKVVPANEIPDGWMGLDIGPDSIKSFSETLDTTKTVIWNGPMGVFEFEKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALNDA 349
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03017 349 Pfam Phosphoglycerate kinase 2 338 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Bial4g03017 349 PANTHER PHOSPHOGLYCERATE KINASE 1 348 IPR001576 GO:0004618(PANTHER)|GO:0004618(InterPro)|GO:0005524(PANTHER)|GO:0005829(PANTHER)|GO:0006094(PANTHER)|GO:0006096(InterPro)|GO:0006096(PANTHER)|GO:0043531(PANTHER)
Bial4g03017 349 FunFam Phosphoglycerate kinase 137 324 - -
Bial4g03017 349 PRINTS Phosphoglycerate kinase family signature 19 41 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Bial4g03017 349 PRINTS Phosphoglycerate kinase family signature 301 312 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Bial4g03017 349 PRINTS Phosphoglycerate kinase family signature 265 290 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Bial4g03017 349 PRINTS Phosphoglycerate kinase family signature 324 341 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Bial4g03017 349 Hamap Phosphoglycerate kinase [pgk]. 1 348 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Bial4g03017 349 Gene3D - 1 132 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Bial4g03017 349 PIRSF Pgk 1 349 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Bial4g03017 349 CDD Phosphoglycerate-kinase 3 348 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Bial4g03017 349 Gene3D - 135 347 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Bial4g03017 349 SUPERFAMILY Phosphoglycerate kinase 2 348 IPR036043 GO:0004618(InterPro)|GO:0006096(InterPro)
Bial4g03017 349 FunFam Phosphoglycerate kinase 1 132 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03017 K00927 phosphoglycerate kinase [EC:2.7.2.3]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr1:30456152 Bial4g03017 Bial-Chr4:69106330 dispersed
Bial Bial-Chr4:69106330 Bial8g03078 Bial-Chr8:72804011 dispersed
Bial Bial-Chr4:69068003 Bial4g03017 Bial-Chr4:69106330 proximal