AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03024 ATGGTATTAAGCGTTTTGTTTCTATTATTTAATCTTTCAGAAAAACAAGGAAACATTCAAGAATATTACAAGAAACAAGAAATGCTCTTTGAAGGGTTCAATGAGATGGAGACAATGAGCAAATCAGGTTTTTTACCTGCAAGTCTGACTGAGGATGAAATGAAGAATCTTGCTCGGAGTGAGCGAATGGCGATCCATGTGTCCAACGTAGCCAATTTGTTTCTGTTTGCTGCTAAAGTTTATGCTTCTATAGAAAGTGGTTCGCTAGCAGTTATTGCATCGACTTTTGATTCGCTTTTGGACTTGTTGTCTGGATTTATTTTATGGTTTACTTCGAACGCCATGAAAAATCCTAACCAATATCACTATCCAATCGGGAAGAATCGTATGCAACCTGTTGGCATTACAGTTTTTGCATCGGTAATGGCAACTCTTGGGTTCCAAATATTGCTAGAGTCCGCTAGAGAACTCATTGAAGAGACTCATCCTAATAAGAACCATGACAACGAAATGTGGGTGATTGGTATCATGGTGTTTGTAACCGCGGTGAAATTTATACTAATGGTTTATTGTCGAAGGTTTGAAAATGAAATAGTGAGAGCATACGCTCAAGATCATTTCTTCGATGTCATCACCAATTCCGTTGGTCTAGGAGCAACGGTATTGGCCATACGTTATAAATGGTGGATTGATCCCGTTGGAGCGATAATTATAGCGTTATATACGATGAATACTTGGGCAAAGACGGTTATAGAGAACGTATGGTCGTTAATAGGGAGAACGGCCCCGCCAGAGTTCTTGGCAAAATTGACGTATTTGGTTTGGAACCATCACGAAGAAATAAAACACATTGATACAGTAAGAGCGTACACATTTGGTAGTTATTACTTTGTGGAGGTAGACATTGTGTTACCAAAGGATATGATGCTTAGCGAAGCTCATAATATCGGGGAAATGTTGCAAGTAAAACTAGAACAATTACCTGAAGTTGAACGAGCATTTGTTCATATCGATTTTGAGTTTACTCACACACCTGAACATAAGCAAAAGGTTTGA 1056 38.64 MVLSVLFLLFNLSEKQGNIQEYYKKQEMLFEGFNEMETMSKSGFLPASLTEDEMKNLARSERMAIHVSNVANLFLFAAKVYASIESGSLAVIASTFDSLLDLLSGFILWFTSNAMKNPNQYHYPIGKNRMQPVGITVFASVMATLGFQILLESARELIEETHPNKNHDNEMWVIGIMVFVTAVKFILMVYCRRFENEIVRAYAQDHFFDVITNSVGLGATVLAIRYKWWIDPVGAIIIALYTMNTWAKTVIENVWSLIGRTAPPEFLAKLTYLVWNHHEEIKHIDTVRAYTFGSYYFVEVDIVLPKDMMLSEAHNIGEMLQVKLEQLPEVERAFVHIDFEFTHTPEHKQKV 351
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03024 351 Gene3D Cation efflux protein transmembrane domain 62 257 IPR027469 -
Bial4g03024 351 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 262 338 IPR036837 -
Bial4g03024 351 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 19 348 IPR050291 GO:0008324(PANTHER)|GO:0016020(PANTHER)
Bial4g03024 351 SUPERFAMILY Cation efflux protein transmembrane domain-like 60 259 IPR027469 -
Bial4g03024 351 Pfam Dimerisation domain of Zinc Transporter 263 338 IPR027470 -
Bial4g03024 351 FunFam Metal tolerance protein 11 64 257 - -
Bial4g03024 351 FunFam Metal tolerance protein 11 260 340 - -
Bial4g03024 351 Gene3D Cation efflux protein, cytoplasmic domain 261 339 IPR036837 -
Bial4g03024 351 NCBIfam cation diffusion facilitator family transporter 64 338 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Bial4g03024 351 Pfam Cation efflux family 66 257 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03024 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
26443 Bial15g01876 Bial4g03024
189189 Bial4g03024 Bial16g02451
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr15:63377608 Bial4g03024 Bial-Chr4:69259589 dispersed
Bial Bial-Chr17:73738371 Bial4g03024 Bial-Chr4:69259589 dispersed
Bial Bial-Chr4:69259589 Bial7g03437 Bial-Chr7:69463607 dispersed
Bial Bial-Chr1:30348256 Bial4g03024 Bial-Chr4:69259589 wgd
Bial Bial-Chr13:34723147 Bial4g03024 Bial-Chr4:69259589 wgd
Bial Bial-Chr16:63947331 Bial4g03024 Bial-Chr4:69259589 wgd