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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03027 ATGATGAATAGTAATCCTTCAACGCCGATGAACGCTCACGCGCCGTCGTCAAGCTCCGGTGGCAACGGATCACCGGATTCAAATACTCCGAGGAGGAATTCGAAGCGGCCTAAATATTCTAGGTTTACACAGCAAGAACTTCCAGCTTGCAAGCCAATTCTTACCCCAAAATGGGTGATTTCAGCATTCATGCTTGTGACAATCGTCTTCATACCTATAGGACTTACTTCCCTCCTTGCTTCTAATGATGTAATTGAAATTGTTGACCGGTACGATAATGCCTGCATAACAGGCACAAAAAGTCAAAAGGTCCAACATATACAAAATGCTGCCACAAATAAAACCTGCACCAGAACCTTGACAGTCAAAAAGAGAATGAAGCAGCCAATTTATGTCTATTATCAGCTCGACAATTTCTATCAGAATCATCGCAGGTATGTCAAGAGCCGAAGTGATACGCAACTGAGAAACCGCGGTGATGAGAATGACACAAGTACATGTAAGCCTGAAAATGAAGCAAATGGAATGTCAATAGTACCATGTGGACTTGTAGCCTGGAGTTTGTTCAATGACACATATGCGTTCTCTACCAGTGGCAACCGGTCATTAACCATAAACAAGCGGGAAATTTCATGGAAGAGTGATAGAGATGAAAAGTTTGGTAGTGATGTCTTCCCAAAAAATTTCCAAAACAGTAGCTTTATTGGTGGTGGAACTCTCAATTCGTCTATCCCATTAAATCAGCAAGAAGATCTTATTGTTTGGATGCGAACTGCTGCGCTTCCAACGTTTAGGAAACTTTATGGGAAAATTGAGCAGGATATTGAGGCTGGTGAAACAATAACTGTGGTATTGGAGAATCGTTACAACACTTACAGTTTCAGTGGCAAGAAGAAACTTGTGCTTTCAACTACCAGCTGGCTTGGTGGGAAAAACAACTTTATTGGCATTGCTTATCTTGCAGTTGGTGGCTTGTGCTTCTTACTAGCTACCACTTTCACTGTCATATATTTTGTTAAGCCAAGGCATCTTGGAGATCCGAATTATTTGTCATGGAACCGAAACCCAGGTGGTCACTAA 1080 41.85 MMNSNPSTPMNAHAPSSSSGGNGSPDSNTPRRNSKRPKYSRFTQQELPACKPILTPKWVISAFMLVTIVFIPIGLTSLLASNDVIEIVDRYDNACITGTKSQKVQHIQNAATNKTCTRTLTVKKRMKQPIYVYYQLDNFYQNHRRYVKSRSDTQLRNRGDENDTSTCKPENEANGMSIVPCGLVAWSLFNDTYAFSTSGNRSLTINKREISWKSDRDEKFGSDVFPKNFQNSSFIGGGTLNSSIPLNQQEDLIVWMRTAALPTFRKLYGKIEQDIEAGETITVVLENRYNTYSFSGKKKLVLSTTSWLGGKNNFIGIAYLAVGGLCFLLATTFTVIYFVKPRHLGDPNYLSWNRNPGGH 359
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03027 359 MobiDBLite consensus disorder prediction 1 42 - -
Bial4g03027 359 MobiDBLite consensus disorder prediction 150 171 - -
Bial4g03027 359 PIRSF Lem3-Cdc50 8 355 IPR005045 GO:0016020(InterPro)
Bial4g03027 359 Pfam LEM3 (ligand-effect modulator 3) family - CDC50 family 78 342 IPR005045 GO:0016020(InterPro)
Bial4g03027 359 MobiDBLite consensus disorder prediction 150 167 - -
Bial4g03027 359 PANTHER CELL CYCLE CONTROL PROTEIN 50 30 351 IPR005045 GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0005886(PANTHER)|GO:0016020(InterPro)
Bial4g03027 359 MobiDBLite consensus disorder prediction 1 30 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03027 K26935 cell cycle control protein 50
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Event-related genes

Select Gene_1 Gene_2 Event_name
26444 Bial15g01879 Bial4g03027
189191 Bial4g03027 Bial16g02454
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr15:63425172 Bial4g03027 Bial-Chr4:69275607 dispersed
Bial Bial-Chr4:69275607 Bial5g02736 Bial-Chr5:71783625 dispersed
Bial Bial-Chr22:17023033 Bial4g03027 Bial-Chr4:69275607 transposed
Bial Bial-Chr1:30332534 Bial4g03027 Bial-Chr4:69275607 wgd
Bial Bial-Chr13:34681606 Bial4g03027 Bial-Chr4:69275607 wgd
Bial Bial-Chr16:63965535 Bial4g03027 Bial-Chr4:69275607 wgd