AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03042 ATGAACATCGAAATCAACGGCAGGCACGCACTTCTCTTCGACGACGACACCGCCGCAGCGTTCGTGAACTCCGACGACGCACTCGTCGAATGGAATTCGCTGTTAATCGACCGTTACGACGTCCGGCACCTCCTGTCCAGTCCGCCGCCGTCTCGGAGGCGGCGTAATCCACAGACGTCGCACTCGTCGTCCGCTGATGCGGACCTTGATTACGAACGGTACCTGGATCTACCTTCAACGTCCGAAGAAGAAGAAGAAGAAGAAGAAGCAAAACCAGAACCCACATCTGGATTTAATGCCGTTCCTTTTTCTTATGGAAATGATGAGGATCCTAATGATCAAAAGACTGCCGAGACTGAACCAGAAGTTCCTAAATTTCATCCACCCTTTCCTGTACCTGACAGCCTTGTTCAAAACTTGCCTTCGACAGAGAAAGTACATCAGATTATTGCAAGGACTGCTCTCTTTGTCAGTAAAAATGGAGGCCAATCAGAAATTATTTTGAGGGTTAAGCAAGGAGACAACCCGACCTTTGGGTTCTTAATGCCAGATCATCACCTACATTCATACTTCAGATATTTGGTTGACAACCAGGATCTCTTACATTCAAAAGACAACGGGCAGTCTGAAAATGAGGAGAAAATATCTAATTCTGGAGCATTGTCTTTACTTGGTTCTGTATATGGCACTGGTGAGGATGATGATGGCGGAACAGATCATCCATCATCATCATCTAAAGAATGTGTATCTGGGAACACTGTGAATGCAGATGCTATCGTTCCTCTTGCTGCAGGGAAAACCGTGTTGCCATCTGACAAAGATGAGCCTGTTATAAAAAAGAATTCTTTGTCAAATGCATTGAAAGAGAGAAGAACTAGTAGTGCTAAGAAGGAAGAGTTTTTGGGCTCACTGTCTTCTGTACCAGATAAGTCGCGGGCTTCTTCTCTACCTCCAATTCCCAGAACTGAACTTATGCTTGTGGACCCACCATCTGAAATGAAACGGTTGGTTGAAAAGATAGTTGAATTCATCATCAAGAATGGGAGACAGTTTGAGACTGTACTCATGGAACAAGACCGTGGTCATGGAAGATTCCCGTTTTTAATCCCATCTAATATATTCCATCCATACTATCTGAAAGTTCTCCAGAGAACCCAAGAGTCGAAACTAACTGTCAAAAGTTACAATGAGAAAGAAGATTTCAGAGGACATATCTCAAACAAGAAAAAGTCTATCTCGAGGGAAATTGAGAATGATATAATGGAATCTGATGATACACCACTTGATTCTGAAAGAAAAGAGAAGTTTAAGATGGTAATTAACAAGTCTAAAAAAGAAGGATCAGACGTGCCTGCTAAGTCCACACAATCACCACCTCGAGTCCAGGTGGATGCTGACCAAGCAGCAGCAATTCTTCAAGCTGCTACCAGAGGCATTAAGCCTTCCAATTTAGGATTTTTGTATGGGCAGTCATCTAATGAAGATGGTTCCTCTGAGTCACAGTTGACTCACGAGCAGAAACTAAAGGCTGAGAGGCTTAAACGGGCCAAGATGTTTGTGGCCCAGCTGAAAAGTGGAGCAGCTCCATTAAAAGCCGGGCTCTCACGTGGTTCATCAGCTGAGCCACAAACTGACAACCGCCTTGCAGCCAAAGAAACCGAGAAGAACACACCCCCTTCAGATGTTGGCCCTTCAGATAATATATCAAAATCAGAAAAAGAACATTTGAACGAAGAAAAACGAGCAATGAGAAAATACCGAGCTCGTTCTACAAATGACAATAAAGATGACCATGATGATGATGATGAGGACGATGACGATGATGAGAGAGAAAGAAAAAGGTCACATAGACACCATAGTAAGAAACATCGATCTCATAGTCATTCAGTTGAAGATGAGAGAGACGAAAAATATGCAGATGAGAGAGATTACAAACATGCAAAAAGACATCGATCTCATCGTTCTTCTCATAAACACGATGATGACATGGACAGGATCACTGATGAAAAGGATCAAACACATTCAAAGAAAAAGAAGCATCGATCTTCTAGCTCTTATGAAGATGGTGAACAAGAAAGTGAACACGAACGTTCTAGAAGGAAACACCGATCTCATGAAGATGAACAAGAAAGTGAACACGAACGTTCTAGAAGGAAACACCGATCTCATGAAGATGAACAAGAAAGTGAACACGGACGTTCTAGAAAGAAACACCGATATGAAGATGAACAAGAGAGTGAAGATGAATATTCTAGAAAGAAACACCGATCGTATGAAGATGAACAAGAAAGTGAACATGAACGTTCTAGAAAGAAACACCGATATGAAGATGAAGATAGTGAACATGAATATTCTAGAAAGAAACACCGATCTCACCATTCTTCACATGATGAAGATGACAGTGATGATAAACATTCTAGAAGAAAGCAAAAACATAGATCTCACAGATCTTCTCATAGGCATAAGCATAGGAAAAGCCACTCTTCTAGGCATAAAGAGAAGCATGACGTGTCTTCAGAAGAGGATTCGAGAGACCAAAATAAGGCTGATAAGAATGTTAAGGGACCAAACTCGGAAAGAGAAGAGCTTGAAGAAGGGGAGATAACGGGTCCGTCAAAAGGAGTATCTTTCGTTAATGGAGCTACCCGAGAACCTTCGGTTGATGCATCAAGTTCTTTACAAGAGCTGAAACCGCTGACTCAGCCATCTACGACAACTGAGGTTTCTGACGATCTCAGGGCCAAAATCAGAGCAATGCTGATGTCAACAATGTAA 2775 42.34 MNIEINGRHALLFDDDTAAAFVNSDDALVEWNSLLIDRYDVRHLLSSPPPSRRRRNPQTSHSSSADADLDYERYLDLPSTSEEEEEEEEAKPEPTSGFNAVPFSYGNDEDPNDQKTAETEPEVPKFHPPFPVPDSLVQNLPSTEKVHQIIARTALFVSKNGGQSEIILRVKQGDNPTFGFLMPDHHLHSYFRYLVDNQDLLHSKDNGQSENEEKISNSGALSLLGSVYGTGEDDDGGTDHPSSSSKECVSGNTVNADAIVPLAAGKTVLPSDKDEPVIKKNSLSNALKERRTSSAKKEEFLGSLSSVPDKSRASSLPPIPRTELMLVDPPSEMKRLVEKIVEFIIKNGRQFETVLMEQDRGHGRFPFLIPSNIFHPYYLKVLQRTQESKLTVKSYNEKEDFRGHISNKKKSISREIENDIMESDDTPLDSERKEKFKMVINKSKKEGSDVPAKSTQSPPRVQVDADQAAAILQAATRGIKPSNLGFLYGQSSNEDGSSESQLTHEQKLKAERLKRAKMFVAQLKSGAAPLKAGLSRGSSAEPQTDNRLAAKETEKNTPPSDVGPSDNISKSEKEHLNEEKRAMRKYRARSTNDNKDDHDDDDEDDDDDERERKRSHRHHSKKHRSHSHSVEDERDEKYADERDYKHAKRHRSHRSSHKHDDDMDRITDEKDQTHSKKKKHRSSSSYEDGEQESEHERSRRKHRSHEDEQESEHERSRRKHRSHEDEQESEHGRSRKKHRYEDEQESEDEYSRKKHRSYEDEQESEHERSRKKHRYEDEDSEHEYSRKKHRSHHSSHDEDDSDDKHSRRKQKHRSHRSSHRHKHRKSHSSRHKEKHDVSSEEDSRDQNKADKNVKGPNSEREELEEGEITGPSKGVSFVNGATREPSVDASSSLQELKPLTQPSTTTEVSDDLRAKIRAMLMSTM 924
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03042 924 Gene3D Surp module 322 391 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Bial4g03042 924 MobiDBLite consensus disorder prediction 567 596 - -
Bial4g03042 924 SMART surpneu2 147 200 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Bial4g03042 924 SMART surpneu2 334 387 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Bial4g03042 924 MobiDBLite consensus disorder prediction 51 65 - -
Bial4g03042 924 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 3 685 IPR040397 GO:0000395(PANTHER)
Bial4g03042 924 Coils Coil 706 726 - -
Bial4g03042 924 ProSiteProfiles SURP motif repeat profile. 336 378 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Bial4g03042 924 MobiDBLite consensus disorder prediction 530 910 - -
Bial4g03042 924 MobiDBLite consensus disorder prediction 226 250 - -
Bial4g03042 924 SUPERFAMILY Surp module (SWAP domain) 308 383 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Bial4g03042 924 MobiDBLite consensus disorder prediction 442 462 - -
Bial4g03042 924 Pfam Alternative splicing regulator 3 91 IPR019147 -
Bial4g03042 924 SUPERFAMILY Surp module (SWAP domain) 125 196 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Bial4g03042 924 SMART DRY-EERY-2 1 109 IPR019147 -
Bial4g03042 924 ProSiteProfiles SURP motif repeat profile. 149 191 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Bial4g03042 924 MobiDBLite consensus disorder prediction 808 831 - -
Bial4g03042 924 MobiDBLite consensus disorder prediction 45 125 - -
Bial4g03042 924 MobiDBLite consensus disorder prediction 656 807 - -
Bial4g03042 924 MobiDBLite consensus disorder prediction 626 646 - -
Bial4g03042 924 Pfam Surp module 334 383 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Bial4g03042 924 Pfam Surp module 148 196 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Bial4g03042 924 MobiDBLite consensus disorder prediction 832 868 - -
Bial4g03042 924 MobiDBLite consensus disorder prediction 287 316 - -
Bial4g03042 924 Gene3D Surp module 142 197 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Bial4g03042 924 MobiDBLite consensus disorder prediction 883 909 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03042 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
189197 Bial4g03042 Bial16g02469
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:64174933 Bial4g03042 Bial-Chr4:69531549 transposed
Bial Bial-Chr16:64172741 Bial4g03042 Bial-Chr4:69531549 wgd