AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03047 ATGGCGTTTCCAATATTTGCTGGAAATCTATACCTATCAATTAGGACTCCTAATTCTAAGGTTCATGTATTTCAGGAAAAGAACATCGATTCACAAGGTCCGGATGACGTGAACAATGATACCATACCATCAGCATCACTGCTAAAGCAGTTAGCCATAGGTGTTGAGACCACAAAAATTGTAAAGTCAATGAAGGATTTGATGATATTAGCTAGAGATTATTCACCAGCGAAACAGAAATCCGGTTTGAGTTTATCTGCCGTCAAGTCATTCGTCGTTGGTGAGAAAGAAGATAAGTTCGCTGCTGATTTTGGTCGTTACGAAAAAGTAATGTCTTTTATGCATTCGCTCACCGATCCAGAAGGACATATTTCAAGAAGGAAAACAAGGTCTCGTTTGGATACAACGACAGTCGTTACTAAGTATTTCAAAGAACTTCATGGTGCACCTCCAGACAGCTTTGTTCCCGAACTTGCTGAAGCGATGGGAAGCATAAAAACTTTGAAGAAAATGGCATTGTTTTGGTGTACGGTTGTTATGGAACTGAGAAATATATGGAGTGAAGGAAAACATATTCCTGGAATCCCAACAGATGAAATACCAAATTTAAACACCTGTCTCTTACATCAACAGTTACAGGTTATCAACTGTTGTGTTTCTAGGAAACGACGTCGTGCTATTGCCACTGCGTCATTAGATTCTGTTCTGAAACAAGCCGATGATAATGCTGGCGTGTCACGTCCTTCTAAGGATATCATTCCAGAAAGCCCTGTTATGTATGCTCGAGATAACTCTGGGAAGTTCGTGCTTCGGTTAGGAGCTGATAAACGACTTGAAAACACAACTTTGTTGGATACCGGTGAGCCTGTGTACACACCGGTGATGCAGGAATGGCCTTTGCTCACAGAAGATGTTATAAAAGAAACCGAAGAATTTGTATTACGTACAGGGAGTGTTGGTGCAGGGTGTTCTCAGCTTCTATCTGATATGCAGGCTTTCAAGGCAGCAAATCCAGGGTGCATATTAGAAGATTTTGTAAGATGGCATTCGCCTCCTGATTGGACGGAAACTTGTGATGACGGTAAAGATGTTACGGTTGGTGATAATTCGCCTTCTAGAGGACACCTGAGTACACGTATGCAGAAAGAAGGTAATTTGTGGTTAGAATTATGGAAAACCGCAAAACCGATACCTGCTGTTAGACAGTCTCCATTATACTATGAGGATTTATCTGTTGAAGGAATTTTGAATGGATTGGAGAATATTTCACCTTCAAGTTTGTTTGAGCAGTTGTTTCTTTCACTTCTAAGTTCCGGATGCGCAATTGTTGAGACGAGAGTCTCGAGTAACGAATTTCTGTACAAGATGTTCAAAGAGTGCAAAGACTACATTGTCCTTGTTTGTCAAAGCAAAAGTTGGGTCGAGAAAGCCAACGATATATGCCAAGTGTATGAGACAATGGTGGTGATGGCATTGAACCCGAATAAGGTTATGAGGATCATGAACGCACCGTCTACTGATCAGACTCCTGCAAATGAGGAACCGAGTAACTTTTGGAAAACATCATCAAAGAACCAAAAAGATAATGCAAGTCCGCAGTCCCCAACAATATTTTCAAAGAAGCCGCCAAAACCGATCCTTTGCTGA 1647 41.11 MAFPIFAGNLYLSIRTPNSKVHVFQEKNIDSQGPDDVNNDTIPSASLLKQLAIGVETTKIVKSMKDLMILARDYSPAKQKSGLSLSAVKSFVVGEKEDKFAADFGRYEKVMSFMHSLTDPEGHISRRKTRSRLDTTTVVTKYFKELHGAPPDSFVPELAEAMGSIKTLKKMALFWCTVVMELRNIWSEGKHIPGIPTDEIPNLNTCLLHQQLQVINCCVSRKRRRAIATASLDSVLKQADDNAGVSRPSKDIIPESPVMYARDNSGKFVLRLGADKRLENTTLLDTGEPVYTPVMQEWPLLTEDVIKETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWTETCDDGKDVTVGDNSPSRGHLSTRMQKEGNLWLELWKTAKPIPAVRQSPLYYEDLSVEGILNGLENISPSSLFEQLFLSLLSSGCAIVETRVSSNEFLYKMFKECKDYIVLVCQSKSWVEKANDICQVYETMVVMALNPNKVMRIMNAPSTDQTPANEEPSNFWKTSSKNQKDNASPQSPTIFSKKPPKPILC 548
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03047 548 MobiDBLite consensus disorder prediction 505 548 - -
Bial4g03047 548 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 37 524 IPR045700 GO:0005096(InterPro)|GO:0005096(PANTHER)|GO:0043547(InterPro)|GO:0043547(PANTHER)
Bial4g03047 548 MobiDBLite consensus disorder prediction 505 537 - -
Bial4g03047 548 Pfam Rab3 GTPase-activating protein catalytic subunit 271 420 IPR026147 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03047 K18270 Rab3 GTPase-activating protein catalytic subunit
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Event-related genes

Select Gene_1 Gene_2 Event_name
189198 Bial4g03047 Bial16g02475
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr20:68420876 Bial4g03047 Bial-Chr4:69574970 dispersed
Bial Bial-Chr4:69574970 Bial8g02987 Bial-Chr8:71789495 dispersed
Bial Bial-Chr4:69574970 Bial4g03049 Bial-Chr4:69592655 proximal
Bial Bial-Chr16:64228149 Bial4g03047 Bial-Chr4:69574970 wgd