AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03262 ATGGCAAACTGGCTAGCTCAGTTACAGTCCATCAAGATTTCATGTGATGGCCTCACGATTGCTGTGAAAGATGTGAGTGATTTGTGGCCTCTTGTCAAGGACAAATTCGACGAACGCCTTCCGTTCCAACGAGCCACATTACACAACAAAAACCGGTATCCGGTCACTGTTGAAAACCTACAAGCTGAGTTTTTGTTAACTACTGACTCAAGGATCAAGAGCCGGGTCCCGCAGGATCAACTGTACTTTTGTTTTCAAGAACCATATGCAACTGTGGTTCTTGTAGCATGTGAGGATCTAGACGAGTTCAAGACGGTACTAAAACCACGTCTGAAGTTAATTTTGCAAAATGAGGAGGAGTGGTTCATCGTGTTTGTGTCCAAAGCTAAATCGGACAAGGACCCCGTGAGCAAGATGGAAAAGAAGGTTTATGCCAGACTTGAAGTTGATTTCAATTCAAGAAGGAGAGATAGTGAAGAACCCTTTTGGGAAGATTTTGAACTCAAAACCATGGAGTGCATCCGAAACACTCTTGATAGACGCGTCCAGTTCTACGAGGACGAGATTCGTAAGCACAATGAACAACGGTTATCGCCCACTTGGAGCTTTTGTGACTTTTTCATCCTCAAAGAATGCCTGGCATTCATGTTAGAGATGGCTAATCTTCCTGAGGATTCGTTACGCGAATATGATCACATAGAGTTCTTTTACTTGGATACAGTTAAAAATGTAGACAAAAATAGAGATTTTGGAGGAAAGGAGCATGGAGACGATCAATCCGCGATACTAAGCCGTAACAACAAACAACTAACACAGATTGTTCAAGATACTTCCTTTAGAGAGTTTGAGTTCCATCAATATCTATTTGCCTGTCAAGCTAAGCTGTTGTTTGATCTACACCGTCCATTTGACGTTGCATCAAGAGGGTTCTCATTTATAGTCAGTTTCTCAGAAACTTTGGCCCGGCACGAGATCATGCGGCTTGCATACCTAATCGGGTTCGGATCTGATATTGAAAGAAGTCCACTCAACAGTGCTTCACTTAGCATGTTACCTTGGCCTATGCCTGCAGAATGGCCTTCACTTCCCTCTGATGCTTCATCTGAGGTTCTTGAAAAAGAAAAGTTAATTCTTCAAGTTACTCCAAGAGCCAAGCACTTTGGTATACAAAGTAAACAGTTGTCTCTTGAACCGTGTCCTCTTTTGAAAACCGAGAGCTCGGTTGATACCAAGAAACTCGCGGAAATTTTTGTGGCTGCCGAACACGCTCTTCGTGCGACTATTACTGATCCTGATTTATGGAAATGTTTATCGTCTTTAGAGGAGTTTGAGAAAAAATACCTTGACTTATCAAAGGGAGCTGCTGATAACTTTTACCATGCATGGTGGAAAAGACATGGAGTCGTTTTCGATGGTGAAATCGCGTCTGTTTATTTCAAACACAAAAACTATGAACAGGCTGCAAGTTCATATGAAAAAGTGTGTGCTCTTTATGCTGGTGATGGGTGGCAAGACTTGTTAGCAGACGTGCTTCCGAATCTAGCCGAATGCCAGAAAATATTAAACGATAAGCCCGGTTACTTATCATCATGTGTGAGATTACTTTCTTTAGATAAAAACTTGTTCTCGGTCAAAGAACGCCAAGTGTTCCAGTCAGAGTTAGTTAGTCTTACACAAACTGAAATGGTTGACCCGAACCCGTTAGATGTGTCATCATTGATAACATATTCGGCTGACACCGGCCCACCAATGGAGCTGTGTGACGGGGATCCGGGCACGTTGACTTTGACTTTATGCAGTGAGTTTCCTGATGATATTACTCTTGAATCACTTAGTCTTACGTTGACATCGACACATAACGCGGATGAACGTGTTAAGGCGATTAAGAGCAGTGGTGTTACAGTATTGAATACGGGCCGGAATACTATTGCTCTTACGTTGCCTGCGCAGAAACCGGGCTCGTATGTGTTGGGTGTTCTTACAGGGCAGATTGGTCATTTAAGATTCAGGTCTCATGGTTTCTCGAAAGGTGGGCCCGCGCATAGTGGTGATATCGGTTTTGATAAGCCCGTTAAGCCTATATTGACGGTGTTCAAACCAAGATCCCTTGTGGACCTATATCCCGCAGTCTCATCCGCATTATTAATAAACAAGCCTCAATGGGTCGGGATAGTCATCAAGCCATTAAACTACTCCCTCAAGGGAGCCCGTTTACACATTGACGTGGGGCCATCATTAAAGATTGAGGAATCACGCGCCATTGAGATCGAGAAACGTGTCGATAACGATAATAACATTTGTCAACTTAATCTTACAAATGGTTGTATAGAGTTACCAGACTGGGCCAGCAGTATAACTACCATTTTATGGATTCCAGTTTGTGCCATTAGTGATGGGCTGCCAAAAGGCACATCAGCAGGTGTATTTTCAACCCAAAGACCAAACATTGCTAATGGGCTGAGGACTTTAGCTCTAAAACTTGAATTTGGAGTGTCACATAATCAAATATTGAAAAGGACTATACCAGTTCTTTTCAACGACCCGTTCCACGTCAGCACACAAGTCACCGACCAAGGCAGTGACGGTTCTTTGTTTTTACAGGTGATATTGCAGTCACAAGTGAAGGCTACATTAACTATACATGATGTTTCATTGGACTTACAAGACGGTTTTTCTCACGCTGGACGAGGTGATGGTAGACCGACATCTGGCATGTTCCCGTTGGTCGTTCCTCCGACATCTAAATCCGGAATATTGTTTGGTATATCACTTGAAGCTACAACCAATGAAGGCAATGAAGATGATGAGGTAGTGGTGCATCGTGATACAATAATAAATATAAAATATGAAATTAGCGGGGATAGATATCATGGATCTCACACCCCTCTATCTCTAAAACCCGAAAAGGATGACACATTTTTAACATTCAAAAGCGGTCTCACTTTACAACGGCCAGTGCAAGAGCCATTATTAGCCGTCGCTTTTCTTCCTTTGCCTTCGAACGGTCTTACAGTTGGTCAACTTGTCACATTCAAATGGAGAGTTGAAAGGTTGACCAGTTTTGACTTAAAGGACGAGTTATTATATGAAGTCAACGCAAACTCCAAGAATTGGATGTTTGCCGGAAGGAAACGAGGCCATGCCCCTCTCTCCTCAAAACAAGGTGATTTCAATATTTCATATCACTTCTTGTGCAAGAATTGA 3204 42.67 MANWLAQLQSIKISCDGLTIAVKDVSDLWPLVKDKFDERLPFQRATLHNKNRYPVTVENLQAEFLLTTDSRIKSRVPQDQLYFCFQEPYATVVLVACEDLDEFKTVLKPRLKLILQNEEEWFIVFVSKAKSDKDPVSKMEKKVYARLEVDFNSRRRDSEEPFWEDFELKTMECIRNTLDRRVQFYEDEIRKHNEQRLSPTWSFCDFFILKECLAFMLEMANLPEDSLREYDHIEFFYLDTVKNVDKNRDFGGKEHGDDQSAILSRNNKQLTQIVQDTSFREFEFHQYLFACQAKLLFDLHRPFDVASRGFSFIVSFSETLARHEIMRLAYLIGFGSDIERSPLNSASLSMLPWPMPAEWPSLPSDASSEVLEKEKLILQVTPRAKHFGIQSKQLSLEPCPLLKTESSVDTKKLAEIFVAAEHALRATITDPDLWKCLSSLEEFEKKYLDLSKGAADNFYHAWWKRHGVVFDGEIASVYFKHKNYEQAASSYEKVCALYAGDGWQDLLADVLPNLAECQKILNDKPGYLSSCVRLLSLDKNLFSVKERQVFQSELVSLTQTEMVDPNPLDVSSLITYSADTGPPMELCDGDPGTLTLTLCSEFPDDITLESLSLTLTSTHNADERVKAIKSSGVTVLNTGRNTIALTLPAQKPGSYVLGVLTGQIGHLRFRSHGFSKGGPAHSGDIGFDKPVKPILTVFKPRSLVDLYPAVSSALLINKPQWVGIVIKPLNYSLKGARLHIDVGPSLKIEESRAIEIEKRVDNDNNICQLNLTNGCIELPDWASSITTILWIPVCAISDGLPKGTSAGVFSTQRPNIANGLRTLALKLEFGVSHNQILKRTIPVLFNDPFHVSTQVTDQGSDGSLFLQVILQSQVKATLTIHDVSLDLQDGFSHAGRGDGRPTSGMFPLVVPPTSKSGILFGISLEATTNEGNEDDEVVVHRDTIINIKYEISGDRYHGSHTPLSLKPEKDDTFLTFKSGLTLQRPVQEPLLAVAFLPLPSNGLTVGQLVTFKWRVERLTSFDLKDELLYEVNANSKNWMFAGRKRGHAPLSSKQGDFNISYHFLCKN 1067
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03262 1067 Coils Coil 175 195 - -
Bial4g03262 1067 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1-TMEM1 320 1056 IPR045126 GO:0006891(PANTHER)|GO:0034498(PANTHER)|GO:0048193(InterPro)|GO:1990071(InterPro)|GO:1990071(PANTHER)
Bial4g03262 1067 SUPERFAMILY TPR-like 474 552 IPR011990 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03262 K20307 trafficking protein particle complex subunit 10
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Event-related genes

Select Gene_1 Gene_2 Event_name
189297 Bial4g03262 Bial16g02662
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr15:60143313 Bial4g03262 Bial-Chr4:74785566 dispersed
Bial Bial-Chr16:68955920 Bial4g03262 Bial-Chr4:74785566 wgd