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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03275 ATGGCCGGCGTTCTCGAAACCCTAACCGTTCCTCGCGCCTCTCTAACTCCGATCGCCTCTTCTCCGATCACTCAACTCTCACTTCGCCGGAACTTCTTTCTGCCGGAATCACGAGCCTCCAAATTAAACGTCAGTTCCTTCCGTTCGTCCGGATCCGTCCGATTGACGTCCAAATTCGGCCGCCGCGGCGGACGAATCGTATGCGAAGCTCAGGAAGCGGCCGTTGAAGTGCTTCCCGTGACTGATGGATCATGGCAATCACTTGTTCTGGATTCTAAGCTTCCTGTGCTAGTTGAATTCTGGGCTCCATGGTGCGGTCCGTGTCGCATGATTCACCCGATCATTGATGAGCTGGCGAAAGAGTTCAACGGCAAGCTCACCTGTTACAAGGTGAACACTGATGAGAGTCCTTCAATTGCTACCCAATATGGTATAAGAAGCATCCCAACTGTCATCATCTTCAAAGACGGAGAGAAGAAAGAAGCAGTTATCGGCGCTGTTCCAAAAACTACTTTGTCAACCAGCATTGAGAAGTTTCTGTAA 543 50.64 MAGVLETLTVPRASLTPIASSPITQLSLRRNFFLPESRASKLNVSSFRSSGSVRLTSKFGRRGGRIVCEAQEAAVEVLPVTDGSWQSLVLDSKLPVLVEFWAPWCGPCRMIHPIIDELAKEFNGKLTCYKVNTDESPSIATQYGIRSIPTVIIFKDGEKKEAVIGAVPKTTLSTSIEKFL 180
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03275 180 ProSiteProfiles Thioredoxin domain profile. 67 180 IPR013766 -
Bial4g03275 180 PRINTS Thioredoxin family signature 96 104 - -
Bial4g03275 180 PRINTS Thioredoxin family signature 104 113 - -
Bial4g03275 180 PRINTS Thioredoxin family signature 144 155 - -
Bial4g03275 180 PANTHER GEO12009P1 53 180 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Bial4g03275 180 Pfam Thioredoxin 77 177 IPR013766 -
Bial4g03275 180 Gene3D Glutaredoxin 76 180 - -
Bial4g03275 180 CDD TRX-family 84 177 - -
Bial4g03275 180 ProSitePatterns Thioredoxin family active site. 97 115 IPR017937 -
Bial4g03275 180 FunFam Thioredoxin 71 180 - -
Bial4g03275 180 NCBIfam thioredoxin 81 179 IPR005746 GO:0015035(InterPro)
Bial4g03275 180 SUPERFAMILY Thioredoxin-like 70 180 IPR036249 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03275 K03671 thioredoxin
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Event-related genes

Select Gene_1 Gene_2 Event_name
25899 Bial13g02587 Bial4g03275
32786 Bial3g03265 Bial4g03275
189630 Bial4g03275 Bial24g02180
374391 Bial24g02180 Bial4g03275
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr14:4932005 Bial4g03275 Bial-Chr4:75178645 dispersed
Bial Bial-Chr1:36684847 Bial4g03275 Bial-Chr4:75178645 dispersed
Bial Bial-Chr2:8190937 Bial4g03275 Bial-Chr4:75178645 dispersed
Bial Bial-Chr4:75178645 Bial6g03031 Bial-Chr6:74631479 dispersed
Bial Bial-Chr24:52328868 Bial4g03275 Bial-Chr4:75178645 wgd
Bial Bial-Chr3:77107818 Bial4g03275 Bial-Chr4:75178645 wgd