AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03297 ATGGCTGCTAATTCAGATAAAGAATCACAAGTTCATGTATTTTCATCATCATCTGAGTTGCTAGAGAAGTTACATGATAAGTGGAAGTTAGTTAAGAAGGTGCCATATCCTGCAATGTATTCTAGTGTTTATGGTGGGATTATTCTCGATCCCGCGATGATGGTCATCCCGATCGATGATCATATGGTGCACCGAGGACACGGCGTGTTTGATACCGCCATTATCCTTGATGGATACCTCTACGAGCTCGACGGTCATATCGACCGTATCTTATTATCCGCATCACGCGCCAAACTCTCACCACCATTCCCAAAATCAACTCTTCGGTCCATCCTCATCCAGCTAACATCCGCATCAAAATGCACGAAAGGAACATTAAGATATTGGATAAGCGCAGGACCAGGAGACTTCCTACTTTCACCTTCCGGGTGCCCAACAACCACATTCTACGCAGTCGTTATAGACGAAGAGTTCTCTCAATGTAAAGAAGGCGTAAAAGTAATAACCTCCACAATCCCAATGAAAGTACCACTATTCGCAACAAGCAAGAACGTTAACTACCTCCCGAACGTTTTATCAAAACTTGAAGCGGAAGAGAAAGGTGCATTTGCGTCGATTTGGGTGGACGATGACGGGTACGTGGCCGAGGGTCCGAACGTGAACGTGGGGTTTGTGACGCGTGAAAAAGAACTTATTTTGCCGTTTTTTGATAAGATTTTGAGTGGGTGTACTGCGAAACGGCTTCTAGAATTGGCGCCGAAGTTGGTTGAAAACGGGCGGTTGAAGAGTGTGACGGTTGGGAATATTACAGTTGAGGATGCTAAACAGGTTAACAGGCTGCTGAAATGA 849 45.11 MAANSDKESQVHVFSSSSELLEKLHDKWKLVKKVPYPAMYSSVYGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILDGYLYELDGHIDRILLSASRAKLSPPFPKSTLRSILIQLTSASKCTKGTLRYWISAGPGDFLLSPSGCPTTTFYAVVIDEEFSQCKEGVKVITSTIPMKVPLFATSKNVNYLPNVLSKLEAEEKGAFASIWVDDDGYVAEGPNVNVGFVTREKELILPFFDKILSGCTAKRLLELAPKLVENGRLKSVTVGNITVEDAKQVNRLLK 282
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03297 282 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 43 274 IPR036038 GO:0003824(InterPro)
Bial4g03297 282 Pfam Amino-transferase class IV 68 276 IPR001544 GO:0003824(InterPro)
Bial4g03297 282 Gene3D - 156 280 IPR043132 -
Bial4g03297 282 Gene3D - 20 155 IPR043131 -
Bial4g03297 282 FunFam D-amino-acid transaminase, chloroplastic 16 154 - -
Bial4g03297 282 PANTHER AMINO-ACID AMINOTRANSFERASE 29 277 IPR050571 GO:0019752(PANTHER)
Bial4g03297 282 FunFam D-alanine aminotransferase 156 281 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03297 K18482 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr4:75503337 Bial8g01381 Bial-Chr8:23296073 transposed
Bial Bial-Chr4:75503337 Bial20g01246 Bial-Chr20:23339145 transposed