AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03317 ATGACAACTCGTATCCTCCTTCGCACTCTCCTCTCCTCCGTACACCAAACCCTAACCCCAACTCGTTCCTTCACCACCACCTCCCACTTCCTCCGCCTCCGTCCTCTCGCCGTCGCCGCCGCCAATCTCCGCCAGCACTCCCTCACCGCCGCCAATACCGTCCGTACGTTCTCCACACGGCCGACGACTTCCTCGTTAAACGACTCGAACCCTAACTGGTCCAATAGGCCTCCCAAGGAGACGATTCTTTTAGACGGGTGTGATTTTGAGCATTGGCTTGTGGTCGTTGAGAAACCCGAAGGCGAGCCGACGAGAGATGAGATTATTGAGTCGTATATTAATACTCTTGCTAAAGTTGTTGGCAGTTATGATGAAGCAAGGATGAAAATCTACTCAGTTTCAACTAGATGTTATTTTGCTTTTGGTGCTCTAGTGTCTGAAGAACTGTCTTATAAGCTTAAAGAATTACCCGGAGTTCGTTGGGTGCTACCTGATTCTTATCTTGATGTTAAGAACAAGGATTATGGAGGTGAACCATTTATTGATGGAAAGGCGGTACCTTATGATCCCAAGTACCATGAAGAGTGGATTAGAAACAATGCTCGGGCCAATGAGAGAAACAGGAGGAACGACAGGCCTCGCAATTTTGACCGGTCAAGAAATTTCGAGAGAAGACGAGAAAACATGCAAAGCAACCGTGGACCGCCTGGTCCACCGCCCAACAACATGAGCGGCCCACCACCGCCCAACAACATGAGCGGCCCGCCACCGCCCAATAACTGGAATGGCCCACCACCGCCCAATAACATGAGCGGCCCACCACCAACTAATAACTGGAATGGGCCACCACCGCCAAACAATATGAGTGGCCCACCACCACCCAATAACTGGAACGGGCCACCACAGGCCAATAACTGGAACGGGCCACCACCGCCCAACAACATGAGAGGTCCACCACCGCCCAATAACTACCAGCAGCAGGGCCGGTATGGGCCGGGACCAGTTGCGGGACAGGCCCAGGATGTAGGTGGAAGAGACATGCCCCCTCAAGCACACTATGAATGA 1065 52.49 MTTRILLRTLLSSVHQTLTPTRSFTTTSHFLRLRPLAVAAANLRQHSLTAANTVRTFSTRPTTSSLNDSNPNWSNRPPKETILLDGCDFEHWLVVVEKPEGEPTRDEIIESYINTLAKVVGSYDEARMKIYSVSTRCYFAFGALVSEELSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNFDRSRNFERRRENMQSNRGPPGPPPNNMSGPPPPNNMSGPPPPNNWNGPPPPNNMSGPPPTNNWNGPPPPNNMSGPPPPNNWNGPPQANNWNGPPPPNNMRGPPPPNNYQQQGRYGPGPVAGQAQDVGGRDMPPQAHYE 354
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03317 354 MobiDBLite consensus disorder prediction 204 230 - -
Bial4g03317 354 MobiDBLite consensus disorder prediction 233 319 - -
Bial4g03317 354 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 10 230 IPR039206 GO:0005739(PANTHER)|GO:0016554(InterPro)|GO:0080156(PANTHER)
Bial4g03317 354 MobiDBLite consensus disorder prediction 204 354 - -
Bial4g03317 354 Pfam Multiple organellar RNA editing factor 1, MORF domain 89 180 IPR054059 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03317 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
32781 Bial3g03208 Bial4g03317
189308 Bial4g03317 Bial16g02686
189637 Bial4g03317 Bial24g02201
363335 Bial12g02341 Bial4g03317
374398 Bial24g02201 Bial4g03317
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr4:75825562 Bial6g01219 Bial-Chr6:21519617 dispersed
Bial Bial-Chr12:53707571 Bial4g03317 Bial-Chr4:75825562 wgd
Bial Bial-Chr16:69497746 Bial4g03317 Bial-Chr4:75825562 wgd
Bial Bial-Chr24:52579467 Bial4g03317 Bial-Chr4:75825562 wgd
Bial Bial-Chr3:76641543 Bial4g03317 Bial-Chr4:75825562 wgd