AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03341 ATGGCTTCCACATCAACTTTCCTCATAATATTCTTCTCTTTACAACTATATTCCTCCATTTCAGCAGTTGTGCCTGCTTCACAAACATTCACTTATGTTAACCAAGGTGATTTCGGCGACTACGTCGTCGAGTACGATGCAAATTATCGTTCTCTTCCCCCATTTAGCAACCCATTCCAGCTTTGCTTTTACAACACAACCCCTAATGCATATACCTTAGCTCTTCGTATGGGCACGGTTCAATCCGAATCCCTCATGCGTTGGGTTTGGGAAGCCAACCGTGGGAACCCGGTTCGTGAAAATGCCACCCTCACATTTGGTACTGACGGAAACCTAGTCCTGGCAGATGCCGACGGACGTGTTGTCTGGCAAACGAACACCGCCAACAAGGGCGTGGTCGGTTTTCAATTGCTTCCAACTGGTAACATGGTTCTTCATGATGGTAAGGGTAATTACTTATGGCAAAGCTTTGATTCCCCAACCGATACTTTCTTGGTCGGCCAAACACTTCGAGCGGGTGGTCCCAATAAGCTCGTGAGTCGGCTTTCAGAGTCGAGTAATGTGGATGGACAATTTAGTTTGGTCATGGAGCCAAAAGGGTTATCCTTGTATTATAAAAGTCCCCACTCGCCTCGACCAATGCTTTATTGGACGTCTAGCGAGTGGTTCACCGTTGACCAAGGTAGTTTGGTCAACTTAACTCTTACGTCAGTCCCAGACACTGACGAGGGTTTTCTATATTACTTAGCGTTCGAATATTTTACCACAAAGTCTTCTTCAAACCGTTACATGGCGTATACACGTTACAACAACACGTTATCGTATCTACGATTAGGGATAGATGGAAACCTTAGATTCTACACGTATAACCCCAATGTGCAAGGTGTGGCATGGGAGTTGGTGTACACGTTTCTTGATAGGGATTCGATTGAAGGCGAGTGTCAATTACCGGGACGGTGTGGGAACTTCGGGTTATGTGAGGATAGTCAGTGTGTGGCGTGCCCGACACCAAATGGGTTAAGTGGTTGGAGCAAAGATTGTGAGGTGAAAAAGGTGAAGTCTTGCAAAGCGAGCGAGTTTGGGTACTACAAGCTTCAAGGGGTTGACCATTTTATGATCAAGTACACGAGGGGAGATGGTGGGACGAAACAAAGCGATTGCGAGAGCAAATGCACGAAGGATTGCAAGTGTATGGGGTACTTCTATCACACGGATGGTTCGAGGTGTTGGATTGCTTATGATTTGAAAACATTAACAAGAGTTGGGAACTCGACTCATTTGGCGTACATCAAAACACCCAACAAGTAG 1308 45.95 MASTSTFLIIFFSLQLYSSISAVVPASQTFTYVNQGDFGDYVVEYDANYRSLPPFSNPFQLCFYNTTPNAYTLALRMGTVQSESLMRWVWEANRGNPVRENATLTFGTDGNLVLADADGRVVWQTNTANKGVVGFQLLPTGNMVLHDGKGNYLWQSFDSPTDTFLVGQTLRAGGPNKLVSRLSESSNVDGQFSLVMEPKGLSLYYKSPHSPRPMLYWTSSEWFTVDQGSLVNLTLTSVPDTDEGFLYYLAFEYFTTKSSSNRYMAYTRYNNTLSYLRLGIDGNLRFYTYNPNVQGVAWELVYTFLDRDSIEGECQLPGRCGNFGLCEDSQCVACPTPNGLSGWSKDCEVKKVKSCKASEFGYYKLQGVDHFMIKYTRGDGGTKQSDCESKCTKDCKCMGYFYHTDGSRCWIAYDLKTLTRVGNSTHLAYIKTPNK 435
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03341 435 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 47 433 IPR051343 -
Bial4g03341 435 FunFam Os04g0303100 protein 79 212 - -
Bial4g03341 435 CDD PAN-AP-plant 354 433 - -
Bial4g03341 435 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 208 IPR036426 -
Bial4g03341 435 Pfam S-locus glycoprotein domain 228 339 IPR000858 GO:0048544(InterPro)
Bial4g03341 435 Pfam D-mannose binding lectin 89 171 IPR001480 -
Bial4g03341 435 SMART blect-4 43 160 IPR001480 -
Bial4g03341 435 CDD B-lectin 43 160 IPR001480 -
Bial4g03341 435 PIRSF SLG 1 435 IPR035446 -
Bial4g03341 435 Gene3D - 39 159 IPR036426 -
Bial4g03341 435 ProSiteProfiles Bulb-type lectin domain profile. 7 158 IPR001480 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03341 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
189315 Bial4g03341 Bial16g02726
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr4:76231878 Bial4g03344 Bial-Chr4:76299058 dispersed
Bial Bial-Chr4:76231878 Bial4g03342 Bial-Chr4:76243815 tandem
Bial Bial-Chr16:71682549 Bial4g03341 Bial-Chr4:76231878 transposed
Bial Bial-Chr16:70098476 Bial4g03341 Bial-Chr4:76231878 wgd