AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03344 ATGGCTTCTACTTCAACTCTCATATTATTATTCTTCTCTTTTCAACTATTATTTTCCATCATTTCAGCAGTTGTGCCTGCTTCACAAACATTCACTTACGTTAACGAAGGCGATTTCGGCGACTACATCGTCGAATACGACGCAAATTATCGTGCTCTTCCTCCTTTTAGCAACCCATTCCAGCTTTGCTTCTACAACACAACCCCTAATGCATATACCTTAGCTCTTCGCATGGGCACGGTTCCATCCGAATCCCTCATGCGTTGGGTTTGGGAAGCTAACCGTGGGAACCCGGTTCATGAAAACGCCACCTTAACATTCGGTACAGACGGAAACCTGGTACTAGCGGATGCTGACGGACGCGTTGTATGGCAAACGAACACCGCCAACAAGGGCGTAGTCGGTTTTCAATTGCTTCCAACTGGTAACATGGTTCTTCATGACGGTAAGGGTAATTACTTATGGCAAAGCTTTGATTCCCCAACCGATACTTTTTTGGTTGGTCAAACACTACGAGCCAGTGGTCCGAATAAGCTCGTGAGTCGGGTTTCTGAGGCGAGTAATGTGGATGGACCGTATAGTTTGATCATGGAGCCAAAAGGGCTATCCTTGTATTATAAAAGTCCCAACTCGCCTCGACCAATGCTTTACTGGACGTCTAGCGAGTGGTTCACCGTTGACCAAGGTAGTTTGGTCAACTTAACTCTTACGTCAGTGCCAGACACTGACGAGGGTTTTCTGTATTACCTAACTTTTGATTTTTTTACCACAAAGTCATCTTCAAACCGCAACATGGCGTTTACACGTTACAACAATACCTTATCGTATCTTCGATTAGGGATAGACGGAAACCTTAGATTCTACACGTATAACCCTAATGTGCAAGGTGTGGCATGGGAGTTGGTGTACACGTTTCTTGATCGGGATTCGATTGAAGGCGAGTGTCAATTACCAGGACGGTGTGGGAACTTCGGGTTATGTGAGGACAGTCAGTGTGTGGCGTGCCCGACACCAAATGGGTTAAGTGGTTGGAGCAAAGATTGTGATGTGAAAAAGGTGACGTCTTGCAAAGCGAGCGAGTTTGGGTACTACAAGCTTCAAGGGGTTGACCATTTTATGATCAAATACACAAGGGGAGATGGTGCGACGAAACAAAGCGATTGCGAGAGCAAATGCACGAAGGATTGCAAGTGTATGGGGTACTTCTATCACACGGATGGTTCGAGGTGTTGGATTGCTTATGATTTGAAAACGTTAACAAGAGTTGGGAACTCGACTCATTTGGCGTACATCAAAACACCAAACAAGTAG 1311 45.46 MASTSTLILLFFSFQLLFSIISAVVPASQTFTYVNEGDFGDYIVEYDANYRALPPFSNPFQLCFYNTTPNAYTLALRMGTVPSESLMRWVWEANRGNPVHENATLTFGTDGNLVLADADGRVVWQTNTANKGVVGFQLLPTGNMVLHDGKGNYLWQSFDSPTDTFLVGQTLRASGPNKLVSRVSEASNVDGPYSLIMEPKGLSLYYKSPNSPRPMLYWTSSEWFTVDQGSLVNLTLTSVPDTDEGFLYYLTFDFFTTKSSSNRNMAFTRYNNTLSYLRLGIDGNLRFYTYNPNVQGVAWELVYTFLDRDSIEGECQLPGRCGNFGLCEDSQCVACPTPNGLSGWSKDCDVKKVTSCKASEFGYYKLQGVDHFMIKYTRGDGATKQSDCESKCTKDCKCMGYFYHTDGSRCWIAYDLKTLTRVGNSTHLAYIKTPNK 436
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03344 436 CDD B-lectin 44 161 IPR001480 -
Bial4g03344 436 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 210 IPR036426 -
Bial4g03344 436 Pfam S-locus glycoprotein domain 229 340 IPR000858 GO:0048544(InterPro)
Bial4g03344 436 ProSiteProfiles Bulb-type lectin domain profile. 28 159 IPR001480 -
Bial4g03344 436 Gene3D - 38 159 IPR036426 -
Bial4g03344 436 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 51 434 IPR051343 -
Bial4g03344 436 Pfam PAN-like domain 377 412 IPR003609 -
Bial4g03344 436 CDD PAN-AP-plant 355 434 - -
Bial4g03344 436 Pfam D-mannose binding lectin 90 174 IPR001480 -
Bial4g03344 436 SMART blect-4 44 161 IPR001480 -
Bial4g03344 436 PIRSF SLG 1 436 IPR035446 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03344 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
189318 Bial4g03344 Bial16g02729
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:70153241 Bial4g03344 Bial-Chr4:76299058 dispersed
Bial Bial-Chr16:70163506 Bial4g03344 Bial-Chr4:76299058 dispersed
Bial Bial-Chr16:70170211 Bial4g03344 Bial-Chr4:76299058 dispersed
Bial Bial-Chr16:71682549 Bial4g03344 Bial-Chr4:76299058 dispersed
Bial Bial-Chr4:76231878 Bial4g03344 Bial-Chr4:76299058 dispersed
Bial Bial-Chr4:76243815 Bial4g03344 Bial-Chr4:76299058 dispersed
Bial Bial-Chr4:76299058 Bial4g03346 Bial-Chr4:76409747 dispersed
Bial Bial-Chr4:76271921 Bial4g03344 Bial-Chr4:76299058 tandem
Bial Bial-Chr4:76299058 Bial4g03345 Bial-Chr4:76373356 tandem