AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03345 ATGACTACTTCTTCCCATTTTATTCACTCAACTTTCTTCCTACTTTTGTTATGGTTTCAACTATTTTTCATATTTTCTGAAGCTCTTGTGCCTGCTTCACAAACATTCACTTATGTTAACAACGATATTGACCTTGAATTCGGCGACTACATCATCGAGTACGGTGCGAATTACCGTTTCCTTCCCCCTTTTAGCAACCCATTCCAGCTTTGCTTCTACAACACAACTCCTGATGCATTTACTCTAGCTCTTCGCATGGGCACGGTCCAATCCGAATCCCTCATGCGTTGGGTTTGGGAAGCTAACCGTGGGGACCCAGTTCGTGATAATGCCACCTTCACATTCGGTAGAGACGGAAACCTAGTCCTGGCGGATGCTGACGGACGCGTTGTATGGCAAACGAATACCGCCAACAAGGGTGTGACCGGTTTTAAAGTACTTCCAACCGGTAACATGGTTCTTCATGACCGTAAAGGTAATTACTTATGGCAAAGCTTTGATTCCCCAACTGATACTCTCTTGGTCGGTCAAACACTCCGAGCCAATGGTCCGAATAAGCTCGTTAGTCGCCTTTCTGAGGCGAGTAATGTGGATGGACCGTATAGTTTGGTGATGGAGCCAAAAGGGTTAACCTTGTATTACAAAAGTCCCAACTCGCCTCGACCCATGGTTTACTGGACGTCTAGCGAGTGGTTCACCGTCGACAAGGGTAGTTTGGTCAATTTAACTCTTACGTCGATTACACAAACCGCCGAGGGTTATCTATATTATTTAGCGTTCGATTACTTTACCACAAAGTCATCTTCAAGCAACATCATGGCGTCTTCTCGTCACAACACTACATTATCATATCTTCGATTAGGGATAGACGGAAACCTTAGATTCTACACGTATAACTACCCGCACGGGCTACAAGAGAGGACATGGGACATGGTGTACACGTTTTTTAGTCGGGATTCAAGGGAAGGCGAGTGTCAGTTACCAGGACGATGTGGGAACTTTGGGCTATGTGAGGACAGTCAGTGTGTGGCGTGCCCGACACCAGACGGGTTAAGTGGTTGGAGCAAAGATTGTGATGTGAAAAAGGTGACGTCTTGCTACAAAAATGACTTTCGGTACTACACGCTTGAAGGCGTTGATCATTTTATGATCAAGTACACGAGGGGAGATGCGGGTACGAGAATAAACAATTGTGAGGAGAAATGCACGCGGGATTGCAAGTGTATGGGGTACTTTTATCACAAGGAGGGTTCGAGGTGCTGGATTGCTTATGATTTGAAAACGTTAACAAGAAATGGGAACTCTAATCATACGGCACACATCAAAATGTCCACAAGGTAG 1341 45.41 MTTSSHFIHSTFFLLLLWFQLFFIFSEALVPASQTFTYVNNDIDLEFGDYIIEYGANYRFLPPFSNPFQLCFYNTTPDAFTLALRMGTVQSESLMRWVWEANRGDPVRDNATFTFGRDGNLVLADADGRVVWQTNTANKGVTGFKVLPTGNMVLHDRKGNYLWQSFDSPTDTLLVGQTLRANGPNKLVSRLSEASNVDGPYSLVMEPKGLTLYYKSPNSPRPMVYWTSSEWFTVDKGSLVNLTLTSITQTAEGYLYYLAFDYFTTKSSSSNIMASSRHNTTLSYLRLGIDGNLRFYTYNYPHGLQERTWDMVYTFFSRDSREGECQLPGRCGNFGLCEDSQCVACPTPDGLSGWSKDCDVKKVTSCYKNDFRYYTLEGVDHFMIKYTRGDAGTRINNCEEKCTRDCKCMGYFYHKEGSRCWIAYDLKTLTRNGNSNHTAHIKMSTR 446
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03345 446 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 63 444 IPR051343 -
Bial4g03345 446 PIRSF SLG 4 446 IPR035446 -
Bial4g03345 446 SMART blect-4 52 169 IPR001480 -
Bial4g03345 446 Gene3D - 44 167 IPR036426 -
Bial4g03345 446 CDD B-lectin 53 169 IPR001480 -
Bial4g03345 446 ProSiteProfiles Bulb-type lectin domain profile. 36 167 IPR001480 -
Bial4g03345 446 Pfam PAN-like domain 390 422 IPR003609 -
Bial4g03345 446 ProSiteProfiles PAN-Apple domain profile. 366 444 IPR003609 -
Bial4g03345 446 Pfam S-locus glycoprotein domain 237 350 IPR000858 GO:0048544(InterPro)
Bial4g03345 446 Pfam D-mannose binding lectin 98 186 IPR001480 -
Bial4g03345 446 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 226 IPR036426 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03345 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
189319 Bial4g03345 Bial16g02731
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:70281321 Bial4g03345 Bial-Chr4:76373356 dispersed
Bial Bial-Chr4:76271921 Bial4g03345 Bial-Chr4:76373356 dispersed
Bial Bial-Chr4:76373356 Bial4g03354 Bial-Chr4:76620583 dispersed
Bial Bial-Chr4:76299058 Bial4g03345 Bial-Chr4:76373356 tandem
Bial Bial-Chr4:76373356 Bial4g03346 Bial-Chr4:76409747 tandem