AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03352 ATGGTTGCTTATTCTTCTTACCTTTCATTTCTAATCTTCTTCTTCTTCTTCATCACCGACGCCATTGTACCTCCTAACGAAACCTTTCATTATGTTAATCAAGGCGAGTTAATTTCGGCCGGAAACGAGTACTACTTATATGATTCCGAATACGATCCAACTTACCGTAGTCTTCCGCCATATACATTCCCCTTCGGCTTGGCCTTCTACAACACCACCCCGAATGCGTACACTCTCGCTCTCCGCATGGGGACCCTGTTCAGCCAGTCCGTGAGGCCATGGGTCTGGGAAGCCAACCGTGGCAAACCAGTCCGCGAAAATGCCACATTCTCATTAGGATCAAACGGAAACCTGGTACTCGCGGAGGCCAATGGCCAGATTGTGTGGCAGACCAACACCGCGAATAAAGGGGTTGTTGGTTTCGCTATACTTGAGGATGGTAACATTGTGCTTCGTGACGCAAAGGGTAACTTTGTCTGGCAAAGCTTTGATTACCCGACCGACACGCTCTTGGTTGGCCAAAAGCTTAGAGTTAAAGGTGGTCCGTACAAGCTCGTGAGCCGCGATTCTGTCAAGAACAACGTTGACGGGGCGTATAGCTTAGTAGTTGAGCCTCAAAGATTGGGTTTGTATTACAAGAACACCATGCGGTACTGGGCATTCACGATCCCTGAATTAAGCCGAAGTAATGGGACAATTCAAAATGCAACGTTTCGAGTTGCGGAAGCTGAATACCTAGACAACAGTTTTCACCAATTGAATTGTGAAGTCGTGAATCTATTCCCGCCATATCGTACAACTTCGATATACATGGGACGAGTTCTGTATAATAGCTCGTTATCGTATCTACGATTAGGCATCGATGGGAACCTACGAGTCTACACTTATCGCCGAGGGGTGCGGGGACAGGCATGGAATCTGTTGTACACTTTGTTTACGAGGCCGAATGGATTCAATGTTGAAGACGAGTGTCAGTTACCAAATCGGTGCGGGAAGTTTGGGCTTTGTGAGGATAGTCAGTGTGTCGGATGTCCTGCGCCTAACGGGGTGTTTGCGTGGAGCAAAGACTGTGACTCGAAGTCACCGGGTTGTAGTGGTTTTACGTATTATCAACTCAAAGGGGTTGACCATTTCACGGTTAAGTATACAGCTGGGACTGGACCGGTGAAAAGGAGTGACTGCGAGAGCAAATGCACGAAGGATTGCAAGTGTTTGGGTTACTTTTATCATACGGATAAGTCGAGGTGTTGGATCGCTTACGAGTTGAAGACGCTGACAAGGGTCGGGAACTCGACTAGTTTGGCGTACATCAAAACACCCGTTCGCTAG 1329 47.78 MVAYSSYLSFLIFFFFFITDAIVPPNETFHYVNQGELISAGNEYYLYDSEYDPTYRSLPPYTFPFGLAFYNTTPNAYTLALRMGTLFSQSVRPWVWEANRGKPVRENATFSLGSNGNLVLAEANGQIVWQTNTANKGVVGFAILEDGNIVLRDAKGNFVWQSFDYPTDTLLVGQKLRVKGGPYKLVSRDSVKNNVDGAYSLVVEPQRLGLYYKNTMRYWAFTIPELSRSNGTIQNATFRVAEAEYLDNSFHQLNCEVVNLFPPYRTTSIYMGRVLYNSSLSYLRLGIDGNLRVYTYRRGVRGQAWNLLYTLFTRPNGFNVEDECQLPNRCGKFGLCEDSQCVGCPAPNGVFAWSKDCDSKSPGCSGFTYYQLKGVDHFTVKYTAGTGPVKRSDCESKCTKDCKCLGYFYHTDKSRCWIAYELKTLTRVGNSTSLAYIKTPVR 442
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03352 442 Pfam D-mannose binding lectin 95 179 IPR001480 -
Bial4g03352 442 ProSiteProfiles PAN-Apple domain profile. 364 441 IPR003609 -
Bial4g03352 442 PIRSF SLG 1 442 IPR035446 -
Bial4g03352 442 SMART blect-4 49 166 IPR001480 -
Bial4g03352 442 ProSiteProfiles Bulb-type lectin domain profile. 43 164 IPR001480 -
Bial4g03352 442 Gene3D - 67 163 IPR036426 -
Bial4g03352 442 CDD B-lectin 49 166 IPR001480 -
Bial4g03352 442 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 65 439 IPR051343 -
Bial4g03352 442 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 220 IPR036426 -
Bial4g03352 442 CDD PAN-AP-plant 392 440 - -
Bial4g03352 442 FunFam Os04g0303100 protein 87 217 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03352 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
189324 Bial4g03352 Bial16g02748
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr4:76581803 Bial4g03354 Bial-Chr4:76620583 dispersed
Bial Bial-Chr4:76561576 Bial4g03352 Bial-Chr4:76581803 tandem
Bial Bial-Chr4:76581803 Bial4g03353 Bial-Chr4:76588899 tandem