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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03429 ATGGCCAACAAGAATCAAAAGACCATTGATTTGGTTAGTGGAACTAGACCATGTCATGATGAAGATGGAGGGTCTGGCATTCGGATGGCGGAGATGCTGCTTAGGCTATTTCCGGTGGGGTTGTGTGTCGCAGCGTTAGTTGTTATGATTAAGGACTCTGAGACTAATGATTATGGTTCTTTGTCTTACTCCAACATCACTGCTTTCAGGTTCTTGGTGCATGCTAATGGCATATTGGCTGGTTATTCGCTACTGACAGCTGCTTTCACCGCGGTACCTCGCCCTATGACCATGCCTCGAGCTTGGACCTTCTTTCTCCTTGACCAGGTTTCAACATACTTGATATTGGCTGCGGGTGCGGTGGCGACAGAGGTTGTGTTTCTATCATACAAAGGTGATGCGGCAGTGACTTGGAGTAGAGCTTGTGGGTCCTACGGCCACTTTTGTAAACAAGCAACAGCGTCAATAACCATCACTTTTCTAGTTGTGATTTGCTACATTTTACTATCGTTAATCTCAGCATATAGGCTCTTTAGCAAGTATGATGCACCCGTCGGGTACCTTAACAAAGGAATTGAGATCGTTGACTTCGGGAGTTAA 600 45.83 MANKNQKTIDLVSGTRPCHDEDGGSGIRMAEMLLRLFPVGLCVAALVVMIKDSETNDYGSLSYSNITAFRFLVHANGILAGYSLLTAAFTAVPRPMTMPRAWTFFLLDQVSTYLILAAGAVATEVVFLSYKGDAAVTWSRACGSYGHFCKQATASITITFLVVICYILLSLISAYRLFSKYDAPVGYLNKGIEIVDFGS 199
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03429 199 NCBIfam plant integral membrane protein TIGR01569 33 176 IPR006459 -
Bial4g03429 199 PANTHER CASP-LIKE PROTEIN 4A4 28 179 - -
Bial4g03429 199 Pfam Casparian strip membrane protein domain 25 165 IPR006702 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03429 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
189650 Bial4g03429 Bial24g02241
363390 Bial12g02384 Bial4g03429
374411 Bial24g02241 Bial4g03429
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr12:54175812 Bial4g03429 Bial-Chr4:78080583 wgd
Bial Bial-Chr24:53063312 Bial4g03429 Bial-Chr4:78080583 wgd