AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03472 ATGGTGGAAGCTTCCAGAATCTTCCACACCACACTCCTTCCTTCACTCCAAACCTCACCTCTCAAACACAAACACCGTACACTCTCTGTACGAAGAACCTCAATCCTTCGCTGCACGATTTCAACTAGCAGTGACACGTCTAAGGCGCCCGTGGCACCGCAGGCGATACCGTGGGGGTGCGAGATCGATTCGGTGGAGAACGCGGCCGCTTTGCAGAAGTGGTTGACCGAGTCCGGGTTACCGGATCAGAAAATGGATATACAGAAGGTTGATGTGGGGGAAAGAGGTTTGGTGGCCAATAATAATATTAGGAAGGGGGAGAAGCTGCTGTTTGTGCCTCCATCACTCGTTATTTCCGCCGATTCGGAGTGGAGTTTTCCAGATGCTGGTGAGGTTTTGAAGAGATATAATGTGCCAGATTGGCCATTAATTGCAACATACCTAATTAGTGAAGCAAGTCTTATGAAATCATCAAGATGGAGCAATTATATATCAGCCTTACCAAGACAACCTTACTCACTTTTATACTGGACGCGTGCAGAATTAGATCGGTACTTGGAAGCATCCCAGATTAGAGAACGTGCAATTGAAAGGATCAATAATGTAACCGGAACATACAATGATTTGAGAGCAAGAATTTTCTCCAAGCATCCTAATTTATTTCCTGAAGAGGTATTCAATATGGAAACATTTAGATGGTCTTTTGGGATTCTTTTTTCGCGTTTGGTTCGATTACCCTCGTTGGATGGAAGAGTTGCATTAGTCCCGTGGGCAGATATGCTTAATCATAGTTGTGATGTGGAAACTTTTTTGGATTATGATAAATCAACAAAGGGAGTTGTATTTACAACCGATCGCGCTTACCAGCCAGGTGAGCAGGTGTTTATTTCATATGGCAGGAAATCTAATGGAGAACTCTTGCTTTCTTACGGGTTTGTGCCAAGGCAAGGTACAAACCCGCGTGACTCGGTTGAGTTGCCATTGATGCTTAAAAAATCAGATAAGTGCTATGAACAAAAGGTGGAAGCTTTGAAGAAGCATGGGCTGTCAGCATCACAATGTTTTCCCTTACAAGTTACGGGTTGGCCGTTGGAGCTAATAGCATATGCATATTTAGCAGTCAGTCCCCCTAGTATGAGTGCAAAGTTTGAAGAGATGGCATCTGCAGCATCGAATAAAAACACCAGCAATAAGGAAATTAAATATCCTGAATTAGAGGAAGAGGCATTGCAATACATATTGGATAGCTGTGAATCCAGCATATCAAAATATACCAAGTTCCTTCAGGCAAGCGGATCAATGGATTTGGATATAACATCTCCAAAGCAGTTGAACCGTAAAGTCTTCCTCAAGCAGTTAGCCGTTGACTTGTGCAATAGCGAACAACGAATTCTCTTTCGTGCCCAATATATTTTGCGAAGAAAGTTAAGGGATATGAGGAGAGGTGAACTCAAGGCCCTTAAATTGTTTGATAGTGTCACAAAGTTTTTTAAATAA 1497 42.82 MVEASRIFHTTLLPSLQTSPLKHKHRTLSVRRTSILRCTISTSSDTSKAPVAPQAIPWGCEIDSVENAAALQKWLTESGLPDQKMDIQKVDVGERGLVANNNIRKGEKLLFVPPSLVISADSEWSFPDAGEVLKRYNVPDWPLIATYLISEASLMKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERINNVTGTYNDLRARIFSKHPNLFPEEVFNMETFRWSFGILFSRLVRLPSLDGRVALVPWADMLNHSCDVETFLDYDKSTKGVVFTTDRAYQPGEQVFISYGRKSNGELLLSYGFVPRQGTNPRDSVELPLMLKKSDKCYEQKVEALKKHGLSASQCFPLQVTGWPLELIAYAYLAVSPPSMSAKFEEMASAASNKNTSNKEIKYPELEEEALQYILDSCESSISKYTKFLQASGSMDLDITSPKQLNRKVFLKQLAVDLCNSEQRILFRAQYILRRKLRDMRRGELKALKLFDSVTKFFK 498
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03472 498 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 68 473 IPR050600 GO:0016279(PANTHER)|GO:0018026(PANTHER)
Bial4g03472 498 Gene3D - 317 487 IPR036464 -
Bial4g03472 498 SMART set-7 83 305 IPR001214 GO:0005515(InterPro)
Bial4g03472 498 PIRSF RMT-SET 4 495 IPR011192 GO:0009507(InterPro)|GO:0030785(InterPro)
Bial4g03472 498 Gene3D set domain protein methyltransferase, domain 1 38 312 - -
Bial4g03472 498 Pfam SET domain 95 299 IPR001214 GO:0005515(InterPro)
Bial4g03472 498 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 329 497 IPR036464 -
Bial4g03472 498 FunFam Ribulose-1,5 bisphosphate carboxylase-oxygenase large subunit N-methyltransferase, chloroplastic 52 312 - -
Bial4g03472 498 Pfam Rubisco LSMT substrate-binding 332 465 IPR015353 -
Bial4g03472 498 FunFam Rubisco methyltransferase family protein 318 481 - -
Bial4g03472 498 ProSiteProfiles SET domain profile. 83 299 IPR001214 GO:0005515(InterPro)
Bial4g03472 498 SUPERFAMILY SET domain 67 315 IPR046341 -
Bial4g03472 498 Coils Coil 192 212 - -
Bial4g03472 498 CDD SET-RBCMT 83 313 IPR044431 GO:0016279(InterPro)|GO:0018022(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03472 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
189383 Bial4g03472 Bial16g02874
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr19:45103836 Bial4g03472 Bial-Chr4:79047915 dispersed
Bial Bial-Chr4:79047915 Bial7g02016 Bial-Chr7:54293398 dispersed
Bial Bial-Chr16:73189631 Bial4g03472 Bial-Chr4:79047915 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Bial SET 1e-15 No_clan TR SET