AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03482 ATGTCTAGGAGTAATAATATTGATAGAGCTATGGGTTTTTACAAGAAACCGAGAATTAGAGACGGTGCGGTTCGTAGGTTTCTTTCTGTAGTGTCGATAACTCTTCTTGGGGTTCTTTTATTGTTCTTTCTTGTTGGGATGAATTCAAACGGTTCAATCAGTTCAAGTAATGAAACCGATAGTAGTATTAGTACCGAGTTTAGCTATAACTTCACGGGTTTGAAGAGTATTAAGCTTCCGAAACATAACCACTTGTCGAGAATGTTGGAGGGTAAAAACCAGTTGCCACCAAGAAACGTGGATTTGTATCCGAATCTAGCGAAAGACCGGATAATAATCGTGCTTTATGTTCACAATCGACCGCAGTATCTCAAATTGGTTGTGGATAGTCTTTCTCGTGTGTCGGGTATTAACGAAACGTTGTTGATCGTAAGTCACGATGGGTACTTCGAAGAAATGAACACAATTGTTGACGGGATTAAGTTTTGTCAAGTGAAACAAGTGTTCGCACCCTTTTCGCCTCATATTTTTCCGAATAGTTTTCCGGGTGTTTCGGTTAATGATTGTAAAGATAAAGAGGACCCGAGTGAGAAACAATGCGAGGGTACAACCGACCAATATGGTAACCATCGGTCACCGAAGATCGTGTCGTTAAAGCATCACTGGTGGTGGATGATGAACACGGTTTGGGACGGGTTAAAGGAGACAACGGGTCATTCGGGTGATATTCTTTTTATCGAAGAAGATCATTTTATTTTACCAAACGCGTACCACAATTTAAAACTATTAACAAAGTTAAAACCCGCAAAATGTCCCGATTGTTACGCTGCGAATCTCGCTCCGAGTAACGTGAAATCCCGAGGCGAGAATTTCGACAGTCTGGTAGCGGAACGAATGGGCAACATCGGGTACACGTTTAATCGAACGGTGTGGAGGAAAATACATAGAAAAGCTAAGGAATTTTGTTACTTTGATGATTATAACTGGGATATAACCATGTGGGTGACGGTGTACCCGTCGTTTGGTCGGCCGGTTTACTCGTTACGTGGACCGAGGGCTAGTGCGGTTCATTTCGGAAAGTGCGGGTTGCACCAGGGTCAAGGGGCGAACGTTGCGTGTGTGGATAACGGTGTGGTGAATATTGAGACCGAAGAGGTTGACAAGGTTGTGAACATAAAACCCGAGTGGGGTGTGCATGTTATGCGCGATCAAGACGGGTATAAAGCCGGGTTTAGGGGGTGGGGTGGGTGGGGGGATAAAAGAGATCATCAGTTGTGTTTGGATTTTGCTAAAATGTATCATGTGAGGAGTAAAACATTTTGA 1323 43.39 MSRSNNIDRAMGFYKKPRIRDGAVRRFLSVVSITLLGVLLLFFLVGMNSNGSISSSNETDSSISTEFSYNFTGLKSIKLPKHNHLSRMLEGKNQLPPRNVDLYPNLAKDRIIIVLYVHNRPQYLKLVVDSLSRVSGINETLLIVSHDGYFEEMNTIVDGIKFCQVKQVFAPFSPHIFPNSFPGVSVNDCKDKEDPSEKQCEGTTDQYGNHRSPKIVSLKHHWWWMMNTVWDGLKETTGHSGDILFIEEDHFILPNAYHNLKLLTKLKPAKCPDCYAANLAPSNVKSRGENFDSLVAERMGNIGYTFNRTVWRKIHRKAKEFCYFDDYNWDITMWVTVYPSFGRPVYSLRGPRASAVHFGKCGLHQGQGANVACVDNGVVNIETEEVDKVVNIKPEWGVHVMRDQDGYKAGFRGWGGWGDKRDHQLCLDFAKMYHVRSKTF 440
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03482 440 PANTHER BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II 24 435 IPR007754 GO:0000139(PANTHER)|GO:0005795(InterPro)|GO:0006487(PANTHER)|GO:0008455(PANTHER)|GO:0008455(InterPro)|GO:0009312(InterPro)|GO:0016020(InterPro)
Bial4g03482 440 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 111 370 IPR029044 -
Bial4g03482 440 SUPERFAMILY Nucleotide-diphospho-sugar transferases 109 435 IPR029044 -
Bial4g03482 440 Pfam N-acetylglucosaminyltransferase II (MGAT2) 98 426 IPR007754 GO:0005795(InterPro)|GO:0008455(InterPro)|GO:0009312(InterPro)|GO:0016020(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03482 K00736 alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.143]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
189392 Bial4g03482 Bial16g02884
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:73291241 Bial4g03482 Bial-Chr4:79149643 wgd