Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bial4g03492 | ATGTTTGTATGTCGCTTTGTTAGATTTGGTTATAGGTTAGATATACTTGATATGGATTTCTCAGAATCTACGAAAGTCGTATACGATCGAGTCCAAAAAATCGAACCCGAAAACGTGTCCAAGATTATCGGGTACCTTCTGTTACAAGATCATGGCGAACGGGAAATGATACGTTTAGCATTCGGGCCGGATAATTTAATACACGGGTTAATCAAACAAGCCCGGACCCACCTTAACCTAGCTTCGAACACATCCGGTCAACCGCTTTCACCTCCTAGGGTCAACTCGATGCCCGAGATGCCAATCGGCCCGATTCACTTCACACCGTTCTCTCCTTCGACCCGTCATTCACCGTTAACGATCCAAGTGCCGAACCGTTGTTGTGACCATCATGGTCAACCGGTTGACTTTGTCCCGATGGTTTACCCGGCTTCGTATCCTGAGGATTATAACCTTCACAACCACCTTCGCTTCATGTCGTTAGAGGATCAAATGGAGCCCGTTAACAGCCCCGATTTGGGCCCACGGGCTAATCGGAGGTCGCCGAGTTTACCTGAGTTTCCGTTTAAAGTTTGTCATTATTTCATCAAAGGGTTTTGTAGACATGGAAACAATTGTAGGTATTTGCATCCTACCCCTGAAAGCTTTTCGCAAATCTTTAGCCCTAAATTTGAGGACGAAAACGTCTTTTCGCCCATGTCACTCGAGAAATTAGAGATGGAACTCACGGAGTTACTGAAATCAAGACGCGGGTTTCCGGTTTCCATAGCTTCTTTACCAATGATATATTATGAAAAGTTCGGTAAAACCCTTCAAGCTGACGGGTATTTGACCGAAAGTCAAAGACACGGGAAAGCCGGTTATAGTTTGACCAAACTTCTCGCTCGCCTTAAAAGCATTTGTCTCATTGACAGGCCACATGGGCAACACGCGGTGGTGCTAGCTGATGACATGGCAAAATTTATGGATCATATTGGAGATAGAAACGAACACGGTGGAATTGTGGCAGGCTCTCGACAGATATATTTGACTTTTCCAGCTGAAAGTACATTTTCCGAGCTCGACGTTTATAATTATTTCAACAAATTTGGGCCTGTTCGTGACGTGAGAATCCCATGTCAGCAAAAGAGAATGTTTGGATTCGTGACATTTGTGTTTGCAGATACTGTTAGGCATATTTTAAACAAGGGGAATCCTCATTTTGTTAGCGGTGCACGTGTTTTGGTCAAACCGTACCGTGAAAAATGCAAGATCGATGATAGGAAAAATGGTTTCGCGTATCAGCATCCTATGTACCAAGGTTCTCACTGTCTTGATACCGAACTTGGGCTGGAGTCAAGCAATGCTCATGGACAACAAACGGACTTCCATTCGAACGAGCGTTTTAACTATTTTCTCGATGTTTTAAACAACAGTTCCGTCAGTGAACAAAATATTAGTCAGATTAATACCAAATACAACGAGCAAGAAAGTGGCCAGGGACTGAATCTTCCGGATAGCCCATTTGCATCGGGATTAGGGGGCGAAATACCGACAGTTATATAG | 1545 | 44.01 | MFVCRFVRFGYRLDILDMDFSESTKVVYDRVQKIEPENVSKIIGYLLLQDHGEREMIRLAFGPDNLIHGLIKQARTHLNLASNTSGQPLSPPRVNSMPEMPIGPIHFTPFSPSTRHSPLTIQVPNRCCDHHGQPVDFVPMVYPASYPEDYNLHNHLRFMSLEDQMEPVNSPDLGPRANRRSPSLPEFPFKVCHYFIKGFCRHGNNCRYLHPTPESFSQIFSPKFEDENVFSPMSLEKLEMELTELLKSRRGFPVSIASLPMIYYEKFGKTLQADGYLTESQRHGKAGYSLTKLLARLKSICLIDRPHGQHAVVLADDMAKFMDHIGDRNEHGGIVAGSRQIYLTFPAESTFSELDVYNYFNKFGPVRDVRIPCQQKRMFGFVTFVFADTVRHILNKGNPHFVSGARVLVKPYREKCKIDDRKNGFAYQHPMYQGSHCLDTELGLESSNAHGQQTDFHSNERFNYFLDVLNNSSVSEQNISQINTKYNEQESGQGLNLPDSPFASGLGGEIPTVI | 514 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bial4g03492 | 514 | ProSiteProfiles | OST-type HTH domain profile. | 234 | 317 | IPR025605 | - | |
| Bial4g03492 | 514 | FunFam | zinc finger CCCH domain-containing protein 53-like isoform X2 | 346 | 417 | - | - | |
| Bial4g03492 | 514 | Gene3D | - | 186 | 268 | - | - | |
| Bial4g03492 | 514 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 339 | 414 | IPR000504 | GO:0003723(InterPro) | |
| Bial4g03492 | 514 | ProSiteProfiles | Zinc finger C3H1-type profile. | 186 | 213 | IPR000571 | GO:0046872(InterPro) | |
| Bial4g03492 | 514 | SUPERFAMILY | CCCH zinc finger | 189 | 211 | IPR036855 | GO:0046872(InterPro) | |
| Bial4g03492 | 514 | Pfam | RNA recognition motif | 352 | 398 | IPR000504 | GO:0003723(InterPro) | |
| Bial4g03492 | 514 | SMART | rrm1-1 | 340 | 410 | IPR000504 | GO:0003723(InterPro) | |
| Bial4g03492 | 514 | Gene3D | - | 345 | 427 | IPR012677 | - | |
| Bial4g03492 | 514 | SUPERFAMILY | RNA-binding domain, RBD | 351 | 428 | IPR035979 | GO:0003676(InterPro) | |
| Bial4g03492 | 514 | SMART | c3hfinal6 | 188 | 212 | IPR000571 | GO:0046872(InterPro) | |
| Bial4g03492 | 514 | PANTHER | RNA-BINDING (RRM-RBD-RNP MOTIFS) | 18 | 447 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bial4g03492 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 189399 | Bial4g03492 | Bial16g02893 | |
| 189658 | Bial4g03492 | Bial24g02276 | |
| 363430 | Bial12g02424 | Bial4g03492 | |
| 374419 | Bial24g02276 | Bial4g03492 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Bial | Bial-Chr2:16561534 | Bial4g03492 | Bial-Chr4:79263416 | dispersed | |
| Bial | Bial-Chr2:78989108 | Bial4g03492 | Bial-Chr4:79263416 | dispersed | |
| Bial | Bial-Chr12:54472086 | Bial4g03492 | Bial-Chr4:79263416 | wgd | |
| Bial | Bial-Chr16:73405015 | Bial4g03492 | Bial-Chr4:79263416 | wgd | |
| Bial | Bial-Chr24:53353584 | Bial4g03492 | Bial-Chr4:79263416 | wgd |