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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03496 ATGTTCCATCACACCCCACTTACTACTCAAACTCAAACCATGGCTCTGACACCAACCACTGACCGTGATCAAATTCAAATCACCAACACTGTTCGTCCGTCTGGTGAAATCCATGTCATTGTGGGCCCCATGTTTGCAGGCAAAACCACTGCTTTGCTTCGTAGGATCAAATCTGAAGCCTCCAATGGCAGGAACATAGCCATGATAAAATCAAGCAAAGATAACCGATACGCAATCGATTCGGTTGTGACCCATGATGGAACAAAGCATCCATGTTGGGCACTGGCTGATCTGATGTCTTTTAAGCAGAATCTTGGAGAAGAGGCATATGAAAAGGTTGATGTAATTGGGATTGATGAGGCACAATTCTTTGATGATCTTTATGACTTTTGTTGTAAAGCTGCTGACCATGATGGCAAGACTGTAATTGTTGCTGGTCTTGATGGTGATTACTTAAGAAGGAACTTTGGTCCTGTGCTTGATATAGTACCACTTGCTGATACAATTACTAAACTAACCGCTCGATGTGAGTTATGTGGCAAACGGGCCCATTTCACGTTTAGGAAGACAAGCGAGACGAAAACCGAACTTATTGGTGGGGCGGATATGTACATGCCTGTTTGTCGTCAACATTATGTTAACGGGCATGTGGTGAAGAAACCGGCTGCTTGA 672 43.9 MFHHTPLTTQTQTMALTPTTDRDQIQITNTVRPSGEIHVIVGPMFAGKTTALLRRIKSEASNGRNIAMIKSSKDNRYAIDSVVTHDGTKHPCWALADLMSFKQNLGEEAYEKVDVIGIDEAQFFDDLYDFCCKAADHDGKTVIVAGLDGDYLRRNFGPVLDIVPLADTITKLTARCELCGKRAHFTFRKTSETKTELIGGADMYMPVCRQHYVNGHVVKKPAA 223
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03496 223 FunFam Thymidine kinase 173 215 - -
Bial4g03496 223 ProSitePatterns Thymidine kinase cellular-type signature. 199 212 IPR020633 GO:0004797(InterPro)|GO:0005524(InterPro)
Bial4g03496 223 Gene3D - 173 214 - -
Bial4g03496 223 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 173 215 - -
Bial4g03496 223 Pfam Thymidine kinase 35 212 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Bial4g03496 223 FunFam Thymidine kinase 31 172 - -
Bial4g03496 223 PANTHER THYMIDINE KINASE 31 220 IPR001267 GO:0004797(InterPro)|GO:0004797(PANTHER)|GO:0005524(InterPro)|GO:0046104(PANTHER)
Bial4g03496 223 PIRSF Tdk 32 222 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Bial4g03496 223 Gene3D - 28 172 IPR027417 -
Bial4g03496 223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 173 IPR027417 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03496 K00857 thymidine kinase [EC:2.7.1.21]
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Event-related genes

Select Gene_1 Gene_2 Event_name
189401 Bial4g03496 Bial16g02897
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:73498844 Bial4g03496 Bial-Chr4:79357245 wgd