AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03518 ATGTCACCAATAATAACAATAATAACAAAATACCCAATATTAATATTATTAATATCAACCCTTCTCATTAATATTACACCCCACCCAACACTAGCAGACCAATCATCAATCTCAGTTCTCATAACCCAGCCTGGTCTTGATTTCATCAAGAATCTGCTAGTAACAAAAGCAATATCCAAAATCACACCCACCCCACTTCAAGAAATTGATAGGGCTGTTAATATTCCTGTGATTGGTAAAGTGCATATTGTGTTGTCTGATATTAATATCTATAGGTTCAATGTTGGGTTGTCACAGGTTGTACCAAATGAGGGTGGGATTACAATTGGTGGGTCAGATGTGAGGTGTGATTTGAGGGTCAAGTGGCATTATTATTATGGTGCTGCCCTGTTTCCGATCTCGGTTTCGGATACTGGGACTGCTGATATTCAGGTTAACGGTATGGAAATGGGAGTAGCACTGGGCTTAGACATTAAAGACGGATCCATGCAACTTTCCACCATTGAATGCAATTGTCACATAGACGATATTACCATAGACTTAGATGGAGGTGCATCTTGGCTCTATCAAGGGATTCTAGATGCTTTTAAAGAAGAAATTGAGTCAATGGTAGCAAAAACAATCACCAACATACTCAAAACCGAAATTTCGAAGCTTGGATTCGTTCTACAAAACCTTCCGAAACAAATTCCTGTCGATGACGTGGCAGCATTAAACGTTACACTTGTTAACAGTCCTTTTCTAAGTGACACTTCATTGGGGTTTGAGATAAACGGATTATTCATAGAAAACAAAAGCGACAAACATTTATACGAAAACAGTTTGCAGCCACCTGTCCGTTGCTCAGATCCTTCAAAAATGATCGGGATTGCGCTAGATGAAGCTGTGTTCAAATCTGCACTTGCCTTATATTACAATGCTATGTTTATGCATTGGATTGTGGACAAACTTCCCGAACAGTCTCTTTTGAACACCGCGGGATGGAGATTTATTATTCCTCAACTCTACAGAAAATACCCGAATGATGATATGAATTTAAATATCTCGTTATCTGATCCGCCAGCTGTGCAGATATCACAGCAGAAAATTGATAGTACCGTTTATGCAGATCTTATTATAGATGTTCTTCAAGGAGTTGACACGATACCTGTTGCTTGCATCTCATTGGTAATCTCTGGCACGGGTTCAGTTCAAATAACCGGAAATAACCTTGCGGCTCATTTGGAAATGAGTGATCTTTCCATGTCATTAAAATGGAGCAAGATTGGCACCTTGCACATGTTTCTAATTCAGCCAGTGGTGTGGACGATGATTGAAACTGTTTTCTTGCCATATGTGAACGCACGACTTGGGGTTGGGTTTCCTTTGCCTCTAATGCACGGGTTTATGCTTCGGAATGCTGAGATAATAACCTCGGATTCTAGAGTCACTGTTTGCGGTGATGTTACATACCAGGAATCATTTACTGGGACCCGAATCTACACTTCGTAG 1491 40.04 MSPIITIITKYPILILLISTLLINITPHPTLADQSSISVLITQPGLDFIKNLLVTKAISKITPTPLQEIDRAVNIPVIGKVHIVLSDINIYRFNVGLSQVVPNEGGITIGGSDVRCDLRVKWHYYYGAALFPISVSDTGTADIQVNGMEMGVALGLDIKDGSMQLSTIECNCHIDDITIDLDGGASWLYQGILDAFKEEIESMVAKTITNILKTEISKLGFVLQNLPKQIPVDDVAALNVTLVNSPFLSDTSLGFEINGLFIENKSDKHLYENSLQPPVRCSDPSKMIGIALDEAVFKSALALYYNAMFMHWIVDKLPEQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSDPPAVQISQQKIDSTVYADLIIDVLQGVDTIPVACISLVISGTGSVQITGNNLAAHLEMSDLSMSLKWSKIGTLHMFLIQPVVWTMIETVFLPYVNARLGVGFPLPLMHGFMLRNAEIITSDSRVTVCGDVTYQESFTGTRIYTS 496
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03518 496 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 37 249 IPR017943 GO:0008289(InterPro)
Bial4g03518 496 SMART bpi2-2 282 480 IPR001124 GO:0008289(InterPro)
Bial4g03518 496 CDD BPI2 287 482 - -
Bial4g03518 496 Gene3D - 38 470 - -
Bial4g03518 496 PIRSF Lipid-binding-protein 14 489 IPR030675 GO:0005615(InterPro)|GO:0008289(InterPro)
Bial4g03518 496 PANTHER OS06G0309200 PROTEIN 16 488 IPR045897 -
Bial4g03518 496 Pfam LBP - BPI - CETP family, C-terminal domain 269 484 IPR001124 GO:0008289(InterPro)
Bial4g03518 496 Pfam LBP - BPI - CETP family, N-terminal domain 45 218 IPR017942 GO:0008289(InterPro)
Bial4g03518 496 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 253 484 IPR017943 GO:0008289(InterPro)
Bial4g03518 496 Gene3D - 44 224 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03518 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
189408 Bial4g03518 Bial16g02920
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr2:15316346 Bial4g03518 Bial-Chr4:79838800 dispersed
Bial Bial-Chr16:73983420 Bial4g03518 Bial-Chr4:79838800 wgd