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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03548 ATGAACGATTCCACCACCGAGTCAAACTCCATATTATTACCAAATCTCAACGAGGTGGAGACGATCATCGGCTACACCTTCAAGAACAAAGAGTTACTAAACGAAGCTTTTACTCACAACTCTTATAAAGATCATGCCGATCCTCAAGCATCCAACGAGCGGCTAGAGTACCTTGGAGACTCGGTTTTGAATCTCATGTTTGCCAAACAACATTACTTTTCATACCCGAAAATGAAGTCTGGCGAGTTGACTCAGTTACGAGCAGCAAATGTCGACACTGAAGCCTTGGCTCGTGTCGGGTTCAGACACGGGTTGCATAGGTTTCTCAAACATGATGATCCATCACTTAATGAAAGGGTTGAAGAATTTAAGGAAGGAATAAAAGAATACCCTATGCATTCTCATGGTATGATCAATTCACCAAAAATACTTGCTGACATTGTTGAAGCTGTTATTGGTGCGGTATATGTCGATACTGGGTTATCAATCGATGATACATGGGAGGTTGTGAAGAATCTGTTGGAACCTTTGACAACACCGGAAAACCTTAGTTTGAATCCGGTGAAGAAGTTGAACGAAACGTGCCAAAAGATGGGGATAAAACTAGAATACAAAAGTTTGTGGATTGAAACCGGAGATATCGAAGTATATAAAGACAACAAACTAATTGGCAAAGGAAACTACAAGAAAAAGAAAACGACTGCTAAGAACAAAGCAGCAGCCGATGCTTACGAGAATCTTATCAAGTTGTTTGACATATGA 762 40.42 MNDSTTESNSILLPNLNEVETIIGYTFKNKELLNEAFTHNSYKDHADPQASNERLEYLGDSVLNLMFAKQHYFSYPKMKSGELTQLRAANVDTEALARVGFRHGLHRFLKHDDPSLNERVEEFKEGIKEYPMHSHGMINSPKILADIVEAVIGAVYVDTGLSIDDTWEVVKNLLEPLTTPENLSLNPVKKLNETCQKMGIKLEYKSLWIETGDIEVYKDNKLIGKGNYKKKKTTAKNKAAADAYENLIKLFDI 253
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03548 253 Pfam Ribonuclease III domain 53 160 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Bial4g03548 253 Gene3D - 184 250 - -
Bial4g03548 253 Gene3D Ribonuclease III domain 10 183 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Bial4g03548 253 Pfam Double-stranded RNA binding motif 187 247 IPR014720 -
Bial4g03548 253 CDD RIBOc 31 183 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Bial4g03548 253 PANTHER DICER-RELATED 12 249 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Bial4g03548 253 SUPERFAMILY RNase III domain-like 15 179 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Bial4g03548 253 SMART riboneu5 31 183 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Bial4g03548 253 ProSiteProfiles Ribonuclease III family domain profile. 16 160 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Bial4g03548 253 SUPERFAMILY dsRNA-binding domain-like 142 247 - -
Bial4g03548 253 ProSitePatterns Ribonuclease III family signature. 53 61 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Bial4g03548 253 Hamap Ribonuclease 3 [rnc]. 19 243 IPR011907 GO:0003723(InterPro)|GO:0004525(InterPro)|GO:0006364(InterPro)
Bial4g03548 253 FunFam Endoribonuclease dicer-like 1 11 181 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03548 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
189662 Bial4g03548 Bial24g02300
363446 Bial12g02449 Bial4g03548
374423 Bial24g02300 Bial4g03548
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr2:7201639 Bial4g03548 Bial-Chr4:80645874 dispersed
Bial Bial-Chr2:7212840 Bial4g03548 Bial-Chr4:80645874 dispersed
Bial Bial-Chr4:65146698 Bial4g03548 Bial-Chr4:80645874 dispersed
Bial Bial-Chr4:80645874 Bial7g03860 Bial-Chr7:73565566 dispersed
Bial Bial-Chr12:54793567 Bial4g03548 Bial-Chr4:80645874 wgd
Bial Bial-Chr24:53644627 Bial4g03548 Bial-Chr4:80645874 wgd