AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03550 ATGGCTTCAAGTTCAGAGATAGGGCTTGCAGCAGCCTTAAATATCCTCACTGCATTTGCGTTTTTAGTAGCATTTGCTATACTTCGAATTCAACCTCTAAACGATAGGGTTTATTTTCCGAAGTGGTATTTGAAGGGATTAAGGAACAATCCACTTCAGTCTGGTGCATTTGTGCAGAAGTTTGTAAACTTGGATTTTAGGTCATACTTGAGGTTTCTGAACTGGATGCCTGCTGCTCTGCACATGCCCGAGCCTGAGCTTATTGATCATGCTGGATTGGACTCTGTTGTTTACTTGAGAATTTACTTGACAGGACTCAAAATATTTGTTCCAATTGCATGCCTTGCTTTCACAGTCATGGTGCCAGTGAATGTGACCAACCGGACTTTGGAGCAGTCTAAATTAACATACACAGAGATAGACAAGCTTTCGATATCCAACATTCCCAAGGGATCAAACAGGTTTTGGACTCATTTAGTCATGGCTTACGCTTTCACCTTTTGGACATGCTATATATTAAAAAGAGAGTATGAAATAATTGCATCCATGAGGTTGCATTTTATTACTTCAGAACAACGGCGGCCTGATCAGTTTACTGTACTTGTGAGAAATGTGCCACCAGACCCTGATGAGACAGTCAATGAACTTGTGGAGCACTTTTTTCTTGTTAACCATCCAGAGCATTATTTATCTCATCAGGTTGTTTACAATGCAAATTCACTATCCAAGATGGTAAATGAGAAGAAAACAAAACAGAATTGGCTTGACTATTATCAACTGAAATATACTAGAAATAACCAGTCAAAAAGACCGTCAGTGAAGACTGGATATCTTGGCCTGTTCGGAAAGAGTGTGGATGCTATCGATTATTATCAATCTGAGATTGATAAACTATCGGAAGAAATATGTAAAGAGAGGGAAAAGATAACAACAAGTTCCAAATATGTGATGCCAGCTGCATTTGTTTCGTTTAAAACGCGTTGGGGTGCTGCTGTTTGTGCACAAACAGAACAATCAAGAAACCCAACTATTTGGTTAACCGAGTGGGCCCCAGAACCCCGTGATGTTTATTGGGACAATCTTGCAATTCCGTTTGTTTCACTCACAGTTAGAAGACTTATAATTGCAGTTGCTTTTTTCTTCCTTACATTCTTCTTCATGATCCCAATAGCATTTGTACAGTCACTTGCTAATATTGATGGGATTGTGAAAGTAGCTCCTTTCATGCGGGGAATTATGGAAGTGAAATTTATAACATCTTTTGTACAAGGAGTTCTTCCGGGAATCGCTTTGAAGATTTTTCTGATCATTCTACCTTCAATATTGATGATGATGTCTAAATTTGAAGGATTTACTTCAATATCTGCTTTAGAGAGGAGATCTGCTACAAGATATTATATTTTCCAGTTTATAAATGTTTTTCTCGGAAGCATAATTACTGGGACTGCATTTCAACAGCTAAATAACTTCATCCACCAGTCTGCAAACGAGATCCCAGTGACAATTGGAGCATCTATACCTATGAAAGCAACTTTCTTTATAACCTATATTATGGTAGATGGATGGGCTGGCGTTGCAGGGGAGATATTAAGAATAAAACCGTTAATATTTTATCACTTAAAGAACTTCCTTTTAGTAAAAACAGAAAAAGACAGAGAAGAAGCAATGGATCCTGGGAGTTTGTCCTTTAACACTGGTGAACCACAAATCCAGCTGTACTTTTTACTTGGGCTCGTTTATGCTGTTGTCACCCCGATTCTGCTTCCTTTTATAGTCGTGTTCTTTGGACTGGCTTATGTCGTTTACCGTCATCAGATTATAAATGTGTATAATCAGCAATACGAGAGTGCAGGAGCATTTTGGCCCGATGTTCACGGACGTATTATAACCGCACTAATCGTTTCACAGTTACTTTTAATGGGTTTACTTAGCACAAAAGAAGCGGCTCAGTCAACCCCATTGCTCATTGTACTCCCGATTTTAACCATTTGGTTTCATCTATTCTGCAAGGGCCGGTTTGAACCCGCGTTTGTTAGGTACCCTTTACAGGAGGCTATGATGAAAGACACGCTAGAACGTGCACGCGAGCCATGTTTAAATGTCAAGGATTATTTAGAAAACGCGTATGTTCACCCGGTGTTTAATAATTATAACAAATGGGATGTGAGTGATGATGGAGTTAGTGATGAAGAGTTGCCTAAAGAACCTACTTTGGTCGCTACAAAACGTTCGTCGAGGACAACCACGCCGGCCAGAAGTCAGCGGAGCGAGTCAACCCGAACGTTGCTGTGTGTTACCGATGAAAGATCGTGTCCCTAA 2319 39.84 MASSSEIGLAAALNILTAFAFLVAFAILRIQPLNDRVYFPKWYLKGLRNNPLQSGAFVQKFVNLDFRSYLRFLNWMPAALHMPEPELIDHAGLDSVVYLRIYLTGLKIFVPIACLAFTVMVPVNVTNRTLEQSKLTYTEIDKLSISNIPKGSNRFWTHLVMAYAFTFWTCYILKREYEIIASMRLHFITSEQRRPDQFTVLVRNVPPDPDETVNELVEHFFLVNHPEHYLSHQVVYNANSLSKMVNEKKTKQNWLDYYQLKYTRNNQSKRPSVKTGYLGLFGKSVDAIDYYQSEIDKLSEEICKEREKITTSSKYVMPAAFVSFKTRWGAAVCAQTEQSRNPTIWLTEWAPEPRDVYWDNLAIPFVSLTVRRLIIAVAFFFLTFFFMIPIAFVQSLANIDGIVKVAPFMRGIMEVKFITSFVQGVLPGIALKIFLIILPSILMMMSKFEGFTSISALERRSATRYYIFQFINVFLGSIITGTAFQQLNNFIHQSANEIPVTIGASIPMKATFFITYIMVDGWAGVAGEILRIKPLIFYHLKNFLLVKTEKDREEAMDPGSLSFNTGEPQIQLYFLLGLVYAVVTPILLPFIVVFFGLAYVVYRHQIINVYNQQYESAGAFWPDVHGRIITALIVSQLLLMGLLSTKEAAQSTPLLIVLPILTIWFHLFCKGRFEPAFVRYPLQEAMMKDTLERAREPCLNVKDYLENAYVHPVFNNYNKWDVSDDGVSDEELPKEPTLVATKRSSRTTTPARSQRSESTRTLLCVTDERSCP 772
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03550 772 MobiDBLite consensus disorder prediction 740 760 - -
Bial4g03550 772 MobiDBLite consensus disorder prediction 724 760 - -
Bial4g03550 772 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 7 725 IPR045122 GO:0005227(PANTHER)|GO:0005227(InterPro)|GO:0005886(PANTHER)
Bial4g03550 772 Pfam Late exocytosis, associated with Golgi transport 9 176 IPR032880 -
Bial4g03550 772 Pfam Calcium-dependent channel, 7TM region, putative phosphate 371 643 IPR003864 GO:0016020(InterPro)
Bial4g03550 772 Pfam Cytosolic domain of 10TM putative phosphate transporter 197 360 IPR027815 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03550 K21989 calcium permeable stress-gated cation channel
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr4:80660971 Bial6g01234 Bial-Chr6:21758722 dispersed
Bial Bial-Chr4:80660971 Bial9g01828 Bial-Chr9:48762988 transposed