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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03630 ATGTTTTCTTCCTATAAGTACCCCTTATCAACTCAACCTTCTCTTCACAAAACTTGCAAGTTGCAACTAGTGTTCTTGAGCTTCACTAACTCAAAAATGGCCAAAAATTCAGTTGCTTTCTATGCATTTCTTTTAATTCTCTTCGTTCTTGCTATCTCAGAAATCCGATTCTTGAAGGGAGAATTATGTGAGAAGCCAAGCCAGACATGGTCTGGAAATTGTGGCAACACGGATCACTGTGACAACCAGTGTCGGTCATGGGAGGGTGCAGCCCATGGAGCTTGTCATTGGCGCGGTGTGAAACATATGTGCTTCTGCTACTTCAACTGTTCCAAAGCCCAGAAGTTGGCTGCGGATAAACTCATAGCGGAAGAGCTCGCCAAAGAGAAGATTGCAGTTGCGAAGGTGCCGGTAACACCTTGA 423 44.68 MFSSYKYPLSTQPSLHKTCKLQLVFLSFTNSKMAKNSVAFYAFLLILFVLAISEIRFLKGELCEKPSQTWSGNCGNTDHCDNQCRSWEGAAHGACHWRGVKHMCFCYFNCSKAQKLAADKLIAEELAKEKIAVAKVPVTP 140
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03630 140 Pfam Gamma-thionin family 62 110 - -
Bial4g03630 140 PANTHER DEFENSIN-LIKE PROTEIN 1 33 110 - GO:0006952(PANTHER)
Bial4g03630 140 SMART gth-4 62 110 IPR003614 GO:0006952(InterPro)
Bial4g03630 140 CDD Knot1 72 107 IPR003614 GO:0006952(InterPro)
Bial4g03630 140 Gene3D - 62 110 IPR036574 -
Bial4g03630 140 SUPERFAMILY Scorpion toxin-like 61 110 IPR036574 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03630 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:74855309 Bial4g03630 Bial-Chr4:81845828 dispersed
Bial Bial-Chr4:81678987 Bial4g03630 Bial-Chr4:81845828 dispersed
Bial Bial-Chr4:81818738 Bial4g03630 Bial-Chr4:81845828 dispersed
Bial Bial-Chr4:81830184 Bial4g03630 Bial-Chr4:81845828 tandem
Bial Bial-Chr4:81845828 Bial4g03631 Bial-Chr4:81865996 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bial18g03094 BST,WGDA 11 77 Plant Defensins gene family AT2G02100 59.42 3.59e-23 82.4
Bial8g00713 WGDA 1 77 Plant Defensins gene family AT2G02120 60.256 9.59e-31 101.0
Bial12g02514 BST,WGDA 6 78 Plant Defensins gene family AT1G19610 41.096 2.52e-16 68.9
Bial12g02515 BST,WGDA 26 78 Plant Defensins gene family AT1G19610 47.17 2.29e-15 68.6
Bial16g02978 BST 5 78 Plant Defensins gene family AT1G19610 48.649 9.27e-21 77.4
Bial16g02977 . 22 78 Plant Defensins gene family AT1G19610 57.895 1.72e-19 76.6
Bial16g02976 . 1 78 Plant Defensins gene family AT1G19610 46.154 2.14e-21 80.1
Bial16g02975 . 1 78 Plant Defensins gene family AT1G19610 51.282 2.93e-26 92.4
Bial16g02974 . 15 76 Plant Defensins gene family AT1G19610 43.077 6.36e-12 59.3
Bial16g02973 . 29 78 Plant Defensins gene family AT1G19610 38.0 3.89e-07 44.7
Bial16g02971 . 7 78 Plant Defensins gene family AT1G19610 32.432 1.18e-07 45.4
Bial16g02967 . 1 78 Plant Defensins gene family AT1G19610 44.872 9.86e-22 81.3
Bial16g02966 . 3 78 Plant Defensins gene family AT1G19610 46.053 2.13e-21 80.5
Bial16g02964 . 1 78 Plant Defensins gene family AT1G19610 50.0 7.09e-24 85.5
Bial16g02963 . 3 78 Plant Defensins gene family AT1G19610 49.351 8.74e-21 77.8
Bial4g03631 BST 22 78 Plant Defensins gene family AT1G19610 56.14 1.89e-18 73.9
Bial4g03630 . 1 78 Plant Defensins gene family AT1G19610 46.154 4.20e-22 82.0
Bial4g03629 . 1 78 Plant Defensins gene family AT1G19610 51.282 7.17e-26 91.7
Bial4g03628 . 9 76 Plant Defensins gene family AT1G19610 44.118 5.78e-13 62.0
Bial4g03627 . 3 77 Plant Defensins gene family AT1G19610 38.158 2.47e-11 54.3
Bial4g03625 . 6 78 Plant Defensins gene family AT1G19610 32.877 2.02e-09 50.1
Bial4g03624 . 7 78 Plant Defensins gene family AT1G19610 32.432 7.78e-08 46.2
Bial4g03621 . 3 78 Plant Defensins gene family AT1G19610 42.105 6.85e-17 68.9
Bial4g03620 BST 1 78 Plant Defensins gene family AT1G19610 43.59 4.77e-21 82.8
Bial4g03619 . 13 78 Plant Defensins gene family AT1G19610 54.545 3.56e-24 86.3
Bial4g03618 . 13 78 Plant Defensins gene family AT1G19610 54.545 1.06e-23 85.1
Bial13g00376 WGDA 1 77 Plant Defensins gene family AT2G02100 57.692 5.08e-31 102.0
Bial24g02363 BST,WGDA 22 78 Plant Defensins gene family AT1G19610 45.614 2.49e-13 60.8
Bial24g02364 BST,WGDA 26 78 Plant Defensins gene family AT1G19610 47.17 2.05e-15 68.6
Bial5g02920 BST,WGDA 11 77 Plant Defensins gene family AT2G02100 57.971 3.59e-23 82.4
Bial15g02667 . 1 72 Plant Defensins gene family AT5G63660 58.904 1.30e-24 87.0