AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03637 ATGGGGTCCGCGTGTTGTGTTGCTGCTAGAGATAGAACTATAACAGATCGGTCTAGTAATGATATTATTATTACAAGAAATGATCATTATTCGCCATCCTGGAGCTTTAGGTGGGATAACCGGGGGCGTGTGGCGGGCGAAGACTCATCCATTAATGACAGGTTGGATAATAAGTCTCATACAACTGTAGAAACTGCTTATGCAACAGAAGGCAGCCCGTTGGACAGCTCTAGAAGCCTGACGTGGCAAAAATCACCACTTTCTGAAGAGATTGGGCTTCCTCAATTAGATACTCTGAGTTCCAAGAATCATCATGAGGCGAAAGATCCAAGGGGAACCCAAACTCCAGTAGCTATGGAACTGTCTCCAACCAACATGTTGACCCCAGCGCATTCAATTTCATCCTTGTCAGCAGCATCTCCTTTGTCTTCGTCCCAAAGTCAACTCATGCCCATGTCAAGTTTAACCCCGTCAAGATGGTCCCGCCGCTCGCCAGGTCACCATCATCTACTCCGTCAAGTATCAGATAGCCGAATTCGTGGCATGATGTCACCAAACTTCTCAATATCCGAAGACGGTTCTCCTTTTATGCACCACCCCGGGTGGACTAATAAGTCAAACATCGGGTCCCATGGCGGTTCTTCAGATAGCTGGTCAAATAGAGATAGATGGTCTTTTGACAGTGATGCTATGAGCTTTAGTCGTGATAGATTTAGCCGATCTAGGGTGTCTTCCTCTCCAACCGTTGAGATCGTGGCATGTGGCATCTGTTCCAAGCTTTTAACCGAACGGTCCACTTGGAGCAGCCATAAAGTCATGGCTAATAACGGGCTTCCCATTGTGTCCGTTCTGATTTGTGGGCACGTTTATCACGCTGAGTGTTTGGAAAACATGACATCCGAGATCAATAAGTATGACCCCGCATGTCCCGTTTGTACTTTGGGAGAAAAAAAGGTTATTAAGATGTCAGGTGAAATGGATTTCAAGGGCAAAATCGGAAAGAAGTTAAGTCGCCATGTGGTTGATGGTGGCAATTCTGGTATTTTTAATCAGTTTACAAACGGCAGGGGTCCCGTGATGGGGTCAAGTTCCAGCATGAAAAGCTCTTCAACCGATTTTCATTGGCTCGGATCATTAGAAGAGGATGTGGTTCTGTTAGGATGCGGATCACCACCGCTTGATACCACTGTTCCGTACATAAGAGAAATGACCAATAAAGAAATAAGCATGGATATTTAG 1239 45.68 MGSACCVAARDRTITDRSSNDIIITRNDHYSPSWSFRWDNRGRVAGEDSSINDRLDNKSHTTVETAYATEGSPLDSSRSLTWQKSPLSEEIGLPQLDTLSSKNHHEAKDPRGTQTPVAMELSPTNMLTPAHSISSLSAASPLSSSQSQLMPMSSLTPSRWSRRSPGHHHLLRQVSDSRIRGMMSPNFSISEDGSPFMHHPGWTNKSNIGSHGGSSDSWSNRDRWSFDSDAMSFSRDRFSRSRVSSSPTVEIVACGICSKLLTERSTWSSHKVMANNGLPIVSVLICGHVYHAECLENMTSEINKYDPACPVCTLGEKKVIKMSGEMDFKGKIGKKLSRHVVDGGNSGIFNQFTNGRGPVMGSSSSMKSSSTDFHWLGSLEEDVVLLGCGSPPLDTTVPYIREMTNKEISMDI 412
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03637 412 PANTHER EXPRESSED PROTEIN 1 318 - -
Bial4g03637 412 SMART ring-2 254 312 IPR001841 -
Bial4g03637 412 ProSiteProfiles Zinc finger RING-type profile. 254 313 IPR001841 -
Bial4g03637 412 MobiDBLite consensus disorder prediction 137 161 - -
Bial4g03637 412 MobiDBLite consensus disorder prediction 137 166 - -
Bial4g03637 412 SUPERFAMILY RING-U-box 248 313 - -
Bial4g03637 412 MobiDBLite consensus disorder prediction 93 117 - -
Bial4g03637 412 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 238 314 IPR013083 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03637 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
27256 Bial15g03281 Bial4g03637
32466 Bial2g00697 Bial4g03637
32775 Bial3g03083 Bial4g03637
189595 Bial4g03637 Bial16g02983
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr4:31008411 Bial4g03637 Bial-Chr4:81961565 dispersed
Bial Bial-Chr15:80189768 Bial4g03637 Bial-Chr4:81961565 wgd
Bial Bial-Chr16:74944542 Bial4g03637 Bial-Chr4:81961565 wgd
Bial Bial-Chr2:7647451 Bial4g03637 Bial-Chr4:81961565 wgd
Bial Bial-Chr3:75320061 Bial4g03637 Bial-Chr4:81961565 wgd