AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial4g03653 ATGGAAACTAAACACAACCTCAAGCTCGCATTTACAGTCACCTGTCTCGCCATAGCTTCAATTCTACTAGCCAACAGTTATCGTAAACAACGGAAGCGTAAACAGAAGATAAACTCGTCGTGTTACTTGAAATCGGAAGATAAACCGCAGCATAAGTTCAAGCGTGTGCTGGCGAATAACTCGTATGCTCCGTTTAAGCACTTGAAGATTGACGAAAATTCATCGGATTTGCATCCGTATGAATCAGAGATCAAGGCTCTGTTGGAAAAGTCACCACTAGAAGTTGAATTCTCTAATGGAATTATGGATATGAGCATGAGTGATAACTATGTTTGGATTGACGATGAATCAAAGTTAAAAGCACTTGTTGAGGTTCTGAGTAAGGAAAAAGTGTTTGCTGTGGATACTGAACAGCATAGCTTTCGGTCATTTTTAGGGTTCACGGCTCTTATTCAGATTTCGACTAGAGACGAAGATTATTTGGTGGACACGATTGCTGTTCATGATATTATGGGACTTCTCGGCCCTGTATTTGCCAATCCGAATATATGCAAGGTGTTCCATGGTGCTGATAATGATGTTATATGGCTACAAAGGGATTTTCATATTTATGTTGTAAACTTATTTGACACTGCTAAGGCTTGTGACGTGTTATCTAAACCTCAGAGATCATTAGCCTACTTACTTGAAACATATTGTGGTGTTACCACTAACAAGCTATACCAGCGTGAAGATTGGCGACAACGTCCACTACCAGTAGATATGGTTGAGTATGCTCGGATGGATGCACATTATTTGCTTTATATTGCAGATTGTCTTGTTTCCGAGCTCAAAAACCAGAAAAACGTGGATGAATTCATCTTCAAACATTGCAGTTTGAGAAAAACCACTTTTACAGATAATAGTGCATCAGAAAATTCAGCCGGTCTTGATGACAAATTGTATTTTGTTTCCGAGGTCAACCGGCGTTCGAATGCCCTGTGTCTGCAACTCTTCACCAAAGATCTAGAAGCTTCCCCAGGGCAGTCTGCAGCTTCTTCTATTATTTCTCGCCATTTAAATGATCATGGAAGTTCTACAAACAACAGTCAGTTTCAGGATCTTGTAAGACGTCTATGCTCTTGGAGGGATTTGATGGCCCGTATGCATGACGAGAGCCTTAAATATGTGCTATCTGATAACGCTATCGTCTCTCTGGCTGAAAAAGTTCCATCAACTCCAACAGACATTTGCACTACAATATCACAAGCCGATATAGACATAGACATTCCAAATTCCAGTTCCACCCCTATGTTTCCATCCTCTGTTGTCTTGAGTCATTTGGATGACTTCCCTTACCTCCTCCAAAATGAGATAACTAATCTTGATGATTTATTTCAACTAATTCTCAAAAAGCACCTCGGTCCAAACGGTTCATGTCCTTTTTCACTTTATAACTATAGTCTACTTTCTAAAACTAATATCAATTCATCAAAGAGATTGGTTTCAAAGGCAAGTGGACACAGGTTTTCAAAAAAAGTTGCTCGCAAGATTTCTCGAGAGCTTTTTGTTCAGAAGTTTTCTTGCAAAGCTCCTGTGTATCATAACTGCAGGATATATGCTAATGATGGAAGATTGTTGTGCTACTGTGATCGAAGGAAGCTTGAATGGTATTTGCAGCGGGACCTAGCAAAACTCGTTGACGAAGACCCACCCGCGATAATGCTTCTTTTTGAACCGAAAGGTCGCCCAGAAGACGAAGGAAATGACTTTTACATTCAAAGTAAAAAAAACATATGTGTAGGGTGTGGTGAAGGAAATCACTACTTACGGTACCGTATAATCCCATCATGCTACAGAATACACTTTCCCGAACATTTAAAAAGCCACCGGTCTCATGATATTGTTTTGGTGTGTGTTGATTGCCATGAAAAAGCACATTCATCTGCTGAAAAGTACAAAAAGAAAGTAGCTTTAGAATTCGGGATACCATTATTTGTACATAAAGTGGTTAATTCTAGTGAGGAAGATGTTTCTGGATCTTCGTCATCTGTTGTGAAACTTGGTGATAGTGGTGTGTCTCCTTTGGAGTTGAGAACGGCTGCAATGGCTCTTTTAAGGCATGGTCCACGGATGCCACCTCAGCGCCGTGAGGAGTTGACACAGGTTGTCAAGAAATATTATGGAGGAAGAGATATATCCGACGAAGATTTAGAAAACGCTTTATTAGTAGGAATGAGTCCGCACGAAAAAAGACGGTTACGTAAGAAAAAAGGCATATCTTTTAGCAATACTTCTCCAACTAACATTGTTTCTGACAATGACGTTAAGGAAAACAATGGACTTCATGAGTCCGAGAATGGTTCCAATCCGGATATTACGGACCATTCTGAACAAAACGGGCTGGGTCATCCGAGTTCTGATGGGGCGGTCTGTAGTTCAAAGTTATCGCTGTTAGGGCATGGCCCACATGGGAAACAAGTAGTTGATTATTTGCTGAAGAATCATGGGGAAGTTGGGATTCAGGAGTTTTGTCAAAGATGGAGACAAGTGTTTGTTGAGAGTATTAATCCTCGGTTTTTACCTGGTGGTTGGGATGTCACTCACAGCGGTAGAAGAGAGTTTGGGGACTTCAGTGTATACAATTTAGCAAATAAGGCTTCTGTTGGTGCTAAGGATTAA 2661 40.51 METKHNLKLAFTVTCLAIASILLANSYRKQRKRKQKINSSCYLKSEDKPQHKFKRVLANNSYAPFKHLKIDENSSDLHPYESEIKALLEKSPLEVEFSNGIMDMSMSDNYVWIDDESKLKALVEVLSKEKVFAVDTEQHSFRSFLGFTALIQISTRDEDYLVDTIAVHDIMGLLGPVFANPNICKVFHGADNDVIWLQRDFHIYVVNLFDTAKACDVLSKPQRSLAYLLETYCGVTTNKLYQREDWRQRPLPVDMVEYARMDAHYLLYIADCLVSELKNQKNVDEFIFKHCSLRKTTFTDNSASENSAGLDDKLYFVSEVNRRSNALCLQLFTKDLEASPGQSAASSIISRHLNDHGSSTNNSQFQDLVRRLCSWRDLMARMHDESLKYVLSDNAIVSLAEKVPSTPTDICTTISQADIDIDIPNSSSTPMFPSSVVLSHLDDFPYLLQNEITNLDDLFQLILKKHLGPNGSCPFSLYNYSLLSKTNINSSKRLVSKASGHRFSKKVARKISRELFVQKFSCKAPVYHNCRIYANDGRLLCYCDRRKLEWYLQRDLAKLVDEDPPAIMLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLVCVDCHEKAHSSAEKYKKKVALEFGIPLFVHKVVNSSEEDVSGSSSSVVKLGDSGVSPLELRTAAMALLRHGPRMPPQRREELTQVVKKYYGGRDISDEDLENALLVGMSPHEKRRLRKKKGISFSNTSPTNIVSDNDVKENNGLHESENGSNPDITDHSEQNGLGHPSSDGAVCSSKLSLLGHGPHGKQVVDYLLKNHGEVGIQEFCQRWRQVFVESINPRFLPGGWDVTHSGRREFGDFSVYNLANKASVGAKD 886
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial4g03653 886 MobiDBLite consensus disorder prediction 746 801 - -
Bial4g03653 886 SUPERFAMILY Ribonuclease H-like 48 284 IPR012337 -
Bial4g03653 886 PANTHER POLYMYOSITIS-SCLERODERMA AUTOANTIGEN-RELATED 31 876 IPR045092 GO:0000175(PANTHER)|GO:0000175(InterPro)|GO:0000176(PANTHER)|GO:0000467(PANTHER)|GO:0000467(InterPro)|GO:0003727(PANTHER)|GO:0005730(PANTHER)|GO:0071035(PANTHER)|GO:0071036(PANTHER)|GO:0071037(PANTHER)|GO:0071038(PANTHER)|GO:0071039(PANTHER)|GO:0071040(PANTHER)|GO:0071044(PANTHER)|GO:0071051(PANTHER)
Bial4g03653 886 SUPERFAMILY HRDC-like 356 414 IPR010997 GO:0000166(InterPro)|GO:0044237(InterPro)
Bial4g03653 886 Gene3D HRDC domain 353 459 IPR044876 -
Bial4g03653 886 Pfam HRDC domain 366 409 IPR002121 GO:0003676(InterPro)
Bial4g03653 886 Pfam 3'-5' exonuclease 110 277 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Bial4g03653 886 ProSiteProfiles HRDC domain profile. 362 451 IPR002121 GO:0003676(InterPro)
Bial4g03653 886 MobiDBLite consensus disorder prediction 776 801 - -
Bial4g03653 886 SMART 35exoneu6 110 278 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Bial4g03653 886 FunFam Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 47 338 - -
Bial4g03653 886 CDD Rrp6p-like-exo 106 285 IPR049559 -
Bial4g03653 886 MobiDBLite consensus disorder prediction 753 769 - -
Bial4g03653 886 Gene3D - 41 312 IPR036397 GO:0003676(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial4g03653 K12951 cobalt/nickel-transporting P-type ATPase D [EC:7.2.2.-]
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Event-related genes

Select Gene_1 Gene_2 Event_name
189604 Bial4g03653 Bial16g02998
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:4520378 Bial4g03653 Bial-Chr4:82201492 dispersed
Bial Bial-Chr19:54390760 Bial4g03653 Bial-Chr4:82201492 dispersed
Bial Bial-Chr4:82201492 Bial7g01338 Bial-Chr7:45971721 dispersed
Bial Bial-Chr16:75114889 Bial4g03653 Bial-Chr4:82201492 wgd