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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial8g00376 ATGGCTCATTTGGAAACAAACAGAGGTGAAGTGAGAATTCATGAAAGTTTGGATGAACTCAGCACGGATTTGGCTGATTACATAGCAGAGTTATCCGAGGTGTCGGTTAAAGAACGAGGCTTTTTCGCCATTGCTTTGTCTGGTGGCTCGGTTATTACCTTGATGAGGAATCTGTGTGGAGCGCCTTATAACAAGACTGTTGATTGGTCAAAATGGTATATATTTTGGGCCGATGAGCGAGTGGTTGCGAAGAATCATGCTGATAGCAACTATAAGCTTGCTAAAGATCATCTTTTGTCTAAGTTGCCTATTGTTCCTAGTCACATACATTCCATCAACGATTCCTTAACCGCAGAAGAAGCTGCAAACGAGTACGAGTTTGTGATCCGACAATTGGTCAGGACCCGTGTGATCAACGTGTCCGAGGTCAGCGACTGCCCGAAGTTCGACCTTATCCTTCTCGGAATGGGCCCGGATGGCCACGTGGCGTCGTTATTCCCTAACCATTCGGTTCTTGAAGAAAAGAACGAATGGGTGACGTTTATCACCACGTCCCCTAAGCCTCCGCCCGAAAGAATAACATTTACGCTGCCTGTTATCAACTCGGCTGCCAATGTGGCGGTGGTCGTGACAGGTGGCGGGAAGGCGGAGGCTGCCCAGCTGGCGATAGGTGATGTGGGACCCAGGGGTCCGGTTTTGCCAGCTAGGATGATCGAACCGAGTGTTGGGAAACTGGTGTGGTTTTTGGATAATTTTGCTGCTTCAAAGATTAATGGTTTTGATTAG 786 47.96 MAHLETNRGEVRIHESLDELSTDLADYIAELSEVSVKERGFFAIALSGGSVITLMRNLCGAPYNKTVDWSKWYIFWADERVVAKNHADSNYKLAKDHLLSKLPIVPSHIHSINDSLTAEEAANEYEFVIRQLVRTRVINVSEVSDCPKFDLILLGMGPDGHVASLFPNHSVLEEKNEWVTFITTSPKPPPERITFTLPVINSAANVAVVVTGGGKAEAAQLAIGDVGPRGPVLPARMIEPSVGKLVWFLDNFAASKINGFD 261
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial8g00376 261 FunFam Probable 6-phosphogluconolactonase 6 258 - -
Bial8g00376 261 CDD 6PGL 18 249 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Bial8g00376 261 NCBIfam 6-phosphogluconolactonase 13 256 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Bial8g00376 261 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 17 247 IPR006148 GO:0005975(InterPro)
Bial8g00376 261 Gene3D - 6 259 - -
Bial8g00376 261 Coils Coil 17 37 - -
Bial8g00376 261 SUPERFAMILY NagB-RpiA-CoA transferase-like 11 258 IPR037171 -
Bial8g00376 261 PANTHER 6-PHOSPHOGLUCONOLACTONASE 6 257 IPR039104 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial8g00376 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
187717 Bial8g00376 Bial20g00141
197924 Bial20g00141 Bial8g00376
364210 Bial13g00227 Bial8g00376
372694 Bial1g00174 Bial8g00376
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
730179 Bial Bial8g00376 Bial-Chr8:4159054 Bial8g01691 Bial-Chr8:32821880
776606 Bial Bial1g00174 Bial-Chr1:1757130 Bial8g00376 Bial-Chr8:4159054
801700 Bial Bial13g00227 Bial-Chr13:2539079 Bial8g00376 Bial-Chr8:4159054
835666 Bial Bial20g00141 Bial-Chr20:1605283 Bial8g00376 Bial-Chr8:4159054
848213 Bial Bial8g00376 Bial-Chr8:4159054 Bial9g02642 Bial-Chr9:71262555