AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial9g01630 ATGTTGTATAGTTTTGGGTACGCGCATAATAATCTCCAGCTACGTGTCTCAAGGACTCTTCTTCATACTTTTTTGGATCCTGCAAAGGCGTTTCCGCAACATTATGGTGCTATAAAAGGGATTACTGCCCTCGGGTCAAATGTGGTTCGTTTGTTTTTACTATCGAATCTTGACCCGTTTCTTCAATACATAGAACCCGAAATGCAACTCGAGAGGCAAAAGAATGAGAGCAAGAGACATGAGGCATATCGAGCGCATGGGGCCTTGATGTGTGCAGCTGGTCTTTGTGTTTACAATCAACTTAAAATGATCCCCAATTTATTATCTCCACCTCCACATAACATTTGGAAGCGGAACGGGAAATTTGGAACATCAAATCCAAATAAACGGAAGGTGTCGGGAATGATGGACCAACCGCTTAAAAAAGTAGTGACAAGCGAGGGGTCTCATTTGGTCAAGGTAGAGATGCAAGGAGGGAGCAGTGGGTTTTCAATAACGCGTGGGGGGTCGGATGCAGGGCCGCCAAGGTTTATGGCGAATGAGAATGTGCCTGGTGGCAGTGGGAGGAAGGATAGGTTTGCTCAAATGTCTTCGCTGGCGGTGTCAAGAGCGTGGAAAAAGGAGACGAATGCTGGACACTTGCTTCCGAAGCTGTATGATGTTTTTGGTGAAAGCATGTTTCCTTTTGTGCCTTCACCGGAACTGTGCAACTTTCACCTGTAA 723 45.92 MLYSFGYAHNNLQLRVSRTLLHTFLDPAKAFPQHYGAIKGITALGSNVVRLFLLSNLDPFLQYIEPEMQLERQKNESKRHEAYRAHGALMCAAGLCVYNQLKMIPNLLSPPPHNIWKRNGKFGTSNPNKRKVSGMMDQPLKKVVTSEGSHLVKVEMQGGSSGFSITRGGSDAGPPRFMANENVPGGSGRKDRFAQMSSLAVSRAWKKETNAGHLLPKLYDVFGESMFPFVPSPELCNFHL 240
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial9g01630 240 Gene3D - 1 80 IPR046344 GO:0006367(InterPro)
Bial9g01630 240 Pfam TAF6 C-terminal HEAT repeat domain 4 57 IPR011442 GO:0006367(InterPro)
Bial9g01630 240 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 4 234 IPR037796 GO:0000124(InterPro)|GO:0003713(PANTHER)|GO:0005669(InterPro)|GO:0005669(PANTHER)|GO:0006367(InterPro)|GO:0016251(InterPro)|GO:0016251(PANTHER)|GO:0046695(InterPro)|GO:0051123(PANTHER)
Bial9g01630 240 CDD TAF6C 5 92 IPR011442 GO:0006367(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial9g01630 K03131 transcription initiation factor TFIID subunit 6
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Event-related genes

Select Gene_1 Gene_2 Event_name
194862 Bial9g01630 Bial21g01617
373928 Bial21g01617 Bial9g01630
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr9:31699559 Bial21g01617 Bial-Chr21:31800182 transposed