AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial9g02645 ATGGTAGTAGAGCAGCCGACAATGACGTATCAGATGGAAAACGGTAATATTATGGAAAATCAAACTTTGTCCACCGGAAAGGAGAACAATACTGTCGTGAACCCACACTACTCTGCACAAGATGTTGCTGATGCCTTTACGAAACAATATTATAAAATTCTGCAAGAAATGCCTAAGGAGGCGTATAATTTTTATAAGGATCAAAGCACGCGAGCCCATCCATGTCTTGATGGTTCAATGAAACTAGTAACAACCCTGCAGCAGTGTATTGATGAGGAGATCATGGCTTCCAATATCAAGGAATGGAATCCTGACCTGGAAACCCTACATGCTCAGGAATCGATAATGAACTCAGTCGTCGTTGGAGTTACGGGCTATTTGATTGACAATGATGGCGTGACAAAAAACTTTGCTCAGACTTTTCTCTTAGCCACACAAGAAGGCGGTGGCTTTTATGTCCACAATGATTTTCTTCAGTTTATGGAAATCATGAAGGCACCAGAAGCTTCACCTTCTGTTGATGATGTGGAAGATCCTCTGCCTGCTCAACAAGCTGATGATTCAGCAAAAGACTCCTCCTTGGAGACTGCACAGACTGCCATCAAGGATCAAACCGAGAAGTCAGCACCTAAAAAAGAAGGAAATGATACTAAAATGAAGTTTTCCGAGGTATTAGAAGGAAAGAAGCCACTTCCGGCTGAACCAAAGAAGAAATGTCAACCTTCTGTTTGGCAGACACCTCCAAAAATCCAAGAAGATTTAAAAAAAGTGTCTTACGCGACAATTTTGGCAAAAGAAGGTTCTGCACCAACCACTGCAGACTCACCTCCAAAAGCTGTTGCAAAAGTTTCCCCAAAAACCGATAAGCCTGCAAGCACGTCTGCTGTTGTACCCAAACCATCTATGGTTCCTAACAATGGTCCTGATGAAAATATCTATGATGTCAAATCGATTCGGGTCAAGGATCTGCCACCAAAAGTTACACAGGAATCAATACTGGAGGTGGTAAAGCAGTTTGGACCAGTCAAACAGAAAAACATCCAGATTAAAGAATATGCACAGGACGGATATCGTTACGCTTTTGTTGAATTCGATCATGCAAGATCTGCCATTAGTGCAGTAGAGGCCCGTTTCATCCGACTTGATGACAAACCATGTGAAATTCAATACAAGAAACATTCTAATCAAGGTGGAAACAACATGGGGAGGCCAGCGTTTGGTCGTAGAGCTGAAAATGGTTGGCGTCGTGAGGGCGAAGGAAGTAATGGTGGCAGCTGGGGAAACAAGCACGTTGACCATGAGAACTTTGGTCAACATTCTGGTCAAACTCGAGATTATAACCAGGGGCGCAACCGTTACTATCAAGATCGTCGTTGA 1377 43.06 MVVEQPTMTYQMENGNIMENQTLSTGKENNTVVNPHYSAQDVADAFTKQYYKILQEMPKEAYNFYKDQSTRAHPCLDGSMKLVTTLQQCIDEEIMASNIKEWNPDLETLHAQESIMNSVVVGVTGYLIDNDGVTKNFAQTFLLATQEGGGFYVHNDFLQFMEIMKAPEASPSVDDVEDPLPAQQADDSAKDSSLETAQTAIKDQTEKSAPKKEGNDTKMKFSEVLEGKKPLPAEPKKKCQPSVWQTPPKIQEDLKKVSYATILAKEGSAPTTADSPPKAVAKVSPKTDKPASTSAVVPKPSMVPNNGPDENIYDVKSIRVKDLPPKVTQESILEVVKQFGPVKQKNIQIKEYAQDGYRYAFVEFDHARSAISAVEARFIRLDDKPCEIQYKKHSNQGGNNMGRPAFGRRAENGWRREGEGSNGGSWGNKHVDHENFGQHSGQTRDYNQGRNRYYQDRR 458
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial9g02645 458 MobiDBLite consensus disorder prediction 391 458 - -
Bial9g02645 458 MobiDBLite consensus disorder prediction 267 310 - -
Bial9g02645 458 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 393 IPR000504 GO:0003723(InterPro)
Bial9g02645 458 SMART rrm1-1 317 389 IPR000504 GO:0003723(InterPro)
Bial9g02645 458 Gene3D - 304 436 IPR012677 -
Bial9g02645 458 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 32 437 IPR039539 GO:0003729(PANTHER)|GO:0005829(PANTHER)|GO:1990904(PANTHER)
Bial9g02645 458 MobiDBLite consensus disorder prediction 169 249 - -
Bial9g02645 458 SUPERFAMILY NTF2-like 38 160 IPR032710 -
Bial9g02645 458 Pfam Nuclear transport factor 2 (NTF2) domain 42 160 IPR002075 -
Bial9g02645 458 Pfam RNA recognition motif 318 376 IPR000504 GO:0003723(InterPro)
Bial9g02645 458 CDD NTF2 38 160 IPR018222 -
Bial9g02645 458 ProSiteProfiles Nuclear transport factor 2 domain profile. 42 160 IPR018222 -
Bial9g02645 458 Gene3D - 31 165 - -
Bial9g02645 458 CDD RRM-SF 318 389 - -
Bial9g02645 458 MobiDBLite consensus disorder prediction 205 235 - -
Bial9g02645 458 MobiDBLite consensus disorder prediction 186 204 - -
Bial9g02645 458 SUPERFAMILY RNA-binding domain, RBD 299 422 IPR035979 GO:0003676(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial9g02645 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr23:41354179 Bial9g02645 Bial-Chr9:71295598 dispersed
Bial Bial-Chr9:71295598 Bial11g01216 Bial-Chr11:48571022 transposed