AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi12g00272 ATGGAGAGAAGATGGCGCGGCAGAGAACAGGTGGGAAGAGAGATTAAGGCGAGAGAGATGGCGTTCGTGAGACAAAAAACAGGGTGGAAGAAATGGCGTTTGCCAGCAACCCTAGGGCTAGGGCGAAAGAGAGTTTTTGTCATGTCCATGGATTTGAAAGAGAAAAAAGGAGATATTGCAGAGAAGCAGCAGCAAGATAGTAGTGTAAACATGATAAAAGTATCGATAAGGAGGTGCTCTTACTGTGGCAAAAGTGGCCATAATTTAAGAACATGCAATGAAAGGAATGTAGTGAGGTTGTTTGGAATAAATATTTTCGATATCGAAAGGGATGATTCAATGAAGAAGAGTGCTAGTCTGGGCAATCTAAGATCATCCATGGGTGAACTGAGCTATAAGGATCATGGTTACTTCTCTGATAGTTTCATTCAGTCTCAAAAGCCTGTTGGGAAGAAGAACAAAGGGATGCCATGGACGGAGGAAGAACACAGAACCTTTCTGGAGGGATTGCGGCGACTTGGAAAAGGTAACTGGAGAGGAATCTCAAAGAAATTTGTCCCCACCAGAACTCCAACCCAAGTGGCCAGCCATGCCCAGAAGTATTTTCTTCGGAGATGCGGCACAATGAGGACGAGGCGCCAATCCAGTCTCTTTGATATGGAGAGTAAAAAACCTGTTGCCTTCTCAGTTCAGATGGCAGGATTCTCTGGTGGGATACTGAACTACCCAGAAGCGAAAATCTACCCATCTGTATCGTTCATGTCGGCAATGAACTTCCACAGCCAAGGACAT 792 45.08 MERRWRGREQVGREIKAREMAFVRQKTGWKKWRLPATLGLGRKRVFVMSMDLKEKKGDIAEKQQQDSSVNMIKVSIRRCSYCGKSGHNLRTCNERNVVRLFGINIFDIERDDSMKKSASLGNLRSSMGELSYKDHGYFSDSFIQSQKPVGKKNKGMPWTEEEHRTFLEGLRRLGKGNWRGISKKFVPTRTPTQVASHAQKYFLRRCGTMRTRRQSSLFDMESKKPVAFSVQMAGFSGGILNYPEAKIYPSVSFMSAMNFHSQGH 264
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi12g00272 264 ProSiteProfiles Zinc finger CCHC-type profile. 77 94 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Busi12g00272 264 SUPERFAMILY Homeodomain-like 151 204 IPR009057 -
Busi12g00272 264 FunFam transcription factor MYB1R1 156 207 - -
Busi12g00272 264 CDD SANT 157 202 IPR001005 -
Busi12g00272 264 ProSiteProfiles Myb-like domain profile. 150 202 IPR001005 -
Busi12g00272 264 PANTHER TRANSCRIPTION FACTOR KUA1 77 225 IPR052245 GO:0009723(PANTHER)|GO:0009739(PANTHER)
Busi12g00272 264 Pfam Myb-like DNA-binding domain 156 202 IPR001005 -
Busi12g00272 264 Gene3D - 158 206 - -
Busi12g00272 264 ProSiteProfiles SANT domain profile. 156 206 IPR017884 -
Busi12g00272 264 SMART sant 154 204 IPR001005 -
Busi12g00272 264 NCBIfam myb-like DNA-binding domain, SHAQKYF class 153 204 IPR006447 GO:0003677(InterPro)
Busi12g00272 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 150 206 IPR017930 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi12g00272 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr12:13604025 Busi8g00504 Busi-Chr8:6927011 dispersed
Busi Busi-Chr12:13604025 Busi2g02047 Busi-Chr2:49663545 wgd
Busi Busi-Chr12:13604025 Busi8g00501 Busi-Chr8:6842307 wgd
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Busi Myb_DNA-binding 6.2e-13 CL0123 TF MYB-related