AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi12g00325 ATGGATTCTTCCTCTTCGTCGATTGCTCAAGGTCCGGACGACGATGTCAAACTGCCGGATCATCATTTTGCGCAATTCGGCGCTGGGTGCTTCTGGGGCGTTGAATTGGCGTTCCAGAGAGTGCCGGGAGTCACGAAGACCGAGGTTGGATACAGTCAAGGGTTGCTGCATAATCCCACTTACCGTGATGTTTGTACGGGCAAGACAAATCATTCGGAGGTTGTTAGGGTTCTGTATGATCCGAAGGAGTGCAGTTATGAGAGTTTGCTCGATATGTTTTGGTCTCGACATGATCCCACCGCGCTTAATCGTCAGGGTGAATTCCCAATGTGGGACAAATTCCAACAATTAGTTGAAGGTCTGAAGGGGGTGGTCATTCTTGATAATGTGGCGGACGATAGATTTTGGTCTCTTGAGTCAAACAGTCAGTTTTCTTGTAAATCTTGGGTGTCTCATTTTAGAAAGCCGGGAGTCACTCATAGTCCTAGATTCCCTTCCTCATTCCTTTGGAAAGCTAAAATTCCCCTAAATGTGAAAATCTTTGCATGGACGGCTATGCTTAATAGGATTAACACCCTTGACAATCTTCAAAAGAGGAGGAAAACTTGGGCTTTGTCACCAAATGCATGCATACTTTGTAAAAAGAATGCTGAATCTGTAGACCATGTTCTTTTGCATTGTGAGGTTGCTGATTTTATCTGGAAAAGGTTATTACATTTTTTAGGAGTTATGTGGGTATTACCAAAAACAGTGGGTGAGTTGACAGCACAGTGGAGGTTCCCTGGTATGTCTCTAAGAGGAAGAAGGCTGTATGACGGAGTGTTTTTTGCCTCTTTATGGAGTCCAGATGCTCTTTTGGACTCAGTGATGGGCTTGGCTGCTTTTTGGGTTTCGATTACCCCAGAATTTGGCGCTTTTGAGGTTGGGGATATTGGTAACGACGTGGGGACACAGTACAGATCTGGAATATACTTCTACACATCAGAGCAGGAGAAAGCAGCACATAATTCCATAGAACAACAGCAGAAGCTCTTGAACAGGAAGATTGTTACTGAGATTCTGCCAGCCAAAAAGTTCTACAGAGCTGAAGAATATCACCAGCAATACCTTGCAAAAGGGGGACAAAGTGGTCTCAAGCAGTCAGCTGAGAAGGGATGCAACGATCCTATCAGATGCTATGGGTAA 1185 44.73 MDSSSSSIAQGPDDDVKLPDHHFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGLLHNPTYRDVCTGKTNHSEVVRVLYDPKECSYESLLDMFWSRHDPTALNRQGEFPMWDKFQQLVEGLKGVVILDNVADDRFWSLESNSQFSCKSWVSHFRKPGVTHSPRFPSSFLWKAKIPLNVKIFAWTAMLNRINTLDNLQKRRKTWALSPNACILCKKNAESVDHVLLHCEVADFIWKRLLHFLGVMWVLPKTVGELTAQWRFPGMSLRGRRLYDGVFFASLWSPDALLDSVMGLAAFWVSITPEFGAFEVGDIGNDVGTQYRSGIYFYTSEQEKAAHNSIEQQQKLLNRKIVTEILPAKKFYRAEEYHQQYLAKGGQSGLKQSAEKGCNDPIRCYG 394
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi12g00325 394 PANTHER MITOCHONDRIAL PEPTIDE METHIONINE SULFOXIDE REDUCTASE 7 107 IPR050162 GO:0005737(PANTHER)|GO:0008113(PANTHER)|GO:0034599(PANTHER)|GO:0036456(PANTHER)
Busi12g00325 394 Gene3D Peptide methionine sulphoxide reductase MsrA 290 394 IPR036509 GO:0008113(InterPro)
Busi12g00325 394 Pfam zinc-binding in reverse transcriptase 144 234 IPR026960 -
Busi12g00325 394 Gene3D Peptide methionine sulphoxide reductase MsrA 2 109 IPR036509 GO:0008113(InterPro)
Busi12g00325 394 Pfam Peptide methionine sulfoxide reductase 24 107 IPR002569 GO:0008113(InterPro)
Busi12g00325 394 Pfam Peptide methionine sulfoxide reductase 307 373 IPR002569 GO:0008113(InterPro)
Busi12g00325 394 SUPERFAMILY Peptide methionine sulfoxide reductase 19 106 IPR036509 GO:0008113(InterPro)
Busi12g00325 394 NCBIfam peptide-methionine (S)-S-oxide reductase MsrA 24 107 IPR002569 GO:0008113(InterPro)
Busi12g00325 394 SUPERFAMILY Peptide methionine sulfoxide reductase 306 375 IPR036509 GO:0008113(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi12g00325 K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr12:15176390 Busi5g00124 Busi-Chr5:5189076 dispersed
Busi Busi-Chr12:15176390 Busi7g01612 Busi-Chr7:35598053 wgd
Busi Busi-Chr12:15176390 Busi8g00487 Busi-Chr8:6607263 wgd