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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi12g00404 ATGAGTTTTCAATGGTTGAGATCTAGATATGAAACTAAACCACAAGAGGAATCTGAAACTGACAGTGAAGAGTCAGATGTTAGTGGTTCTGATGGGGATGACACATCTTGGATCTCATGGTTTTGCAATCTTCGAGGGAATGAATTCTTCTGTGAAGTTGATGATGAGTACATCCAAGATGATTTTAACCTCTGTGGGTTAAGCAGTCAAGTTCCTTATTATGATTATGCACTTGATTTGATTCTTGATGTTGAGTCTTCTCATGGTGATATGTTTACTGAGGAACAAAATGAGTTGATTGAATCAGCAGCAGAGATGTTGTATGGTTTGATTCATGTCCGATATATATTAACCAGCAAAGGAATGTCTGCAATGCTAGATAAGTACAAGAACTATGATTTTGGGAGATGTCCAAGAGTTTACTGCTGTGGACAGCCCTGTCTTCCAGTTGGTCAATCAGACATTCCTAGATCAAGTACAGTTAAAATCTACTGTCCCAAATGTGAAGATATCTACTACCTCGATCGAAGTATCAAGGCAGTATCCTTTATGTACTATTTTATGAAGTTAGAAACTTACATGCATATCCACAAAGATAAGCTGCTTTCAACAGATGGGAAGTGCTTTGTTCCCTTAGTTTTTTTTGAAAACAAGTGGGACATTGCTCTTGAAAGTAGATGTTGTCCATTATTTCATGGGAGAGTTAGAGACATGGGAGTGCGGGAGAAGAGGATAAAGACTGTTCTGTGGGTTATGGAAGGCCACGATAAGCAGAACAAAGTGTCTGGATATTGA 795 38.49 MSFQWLRSRYETKPQEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHVRYILTSKGMSAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYLDRSIKAVSFMYYFMKLETYMHIHKDKLLSTDGKCFVPLVFFENKWDIALESRCCPLFHGRVRDMGVREKRIKTVLWVMEGHDKQNKVSGY 264
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi12g00404 264 ProSitePatterns Casein kinase II regulatory subunit signature. 137 168 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Busi12g00404 264 SMART CK-II-beta-2 36 198 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Busi12g00404 264 FunFam Casein kinase II subunit beta 134 203 - -
Busi12g00404 264 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 29 133 IPR016149 GO:0005956(InterPro)|GO:0019887(InterPro)
Busi12g00404 264 MobiDBLite consensus disorder prediction 1 32 - -
Busi12g00404 264 Pfam Casein kinase II regulatory subunit 36 181 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Busi12g00404 264 PANTHER CASEIN KINASE II SUBUNIT BETA 16 200 IPR000704 GO:0005737(PANTHER)|GO:0005956(InterPro)|GO:0005956(PANTHER)|GO:0019887(PANTHER)|GO:0019887(InterPro)
Busi12g00404 264 Gene3D - 134 214 - -
Busi12g00404 264 PRINTS Casein kinase II regulatory subunit family signature 155 176 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Busi12g00404 264 PRINTS Casein kinase II regulatory subunit family signature 133 154 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Busi12g00404 264 PRINTS Casein kinase II regulatory subunit family signature 53 67 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Busi12g00404 264 PRINTS Casein kinase II regulatory subunit family signature 36 52 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Busi12g00404 264 PRINTS Casein kinase II regulatory subunit family signature 108 129 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Busi12g00404 264 FunFam Casein kinase II subunit beta 29 133 - -
Busi12g00404 264 SUPERFAMILY Casein kinase II beta subunit 34 187 IPR035991 GO:0005956(InterPro)|GO:0019887(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi12g00404 K03115 casein kinase II subunit beta
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr12:19160595 Busi2g00030 Busi-Chr2:1123375 dispersed
Busi Busi-Chr12:19160595 Busi8g01139 Busi-Chr8:17787836 wgd