AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi12g00410 ATGTATAGAGAACGTGGCGCTGGTGGATCAAAGTCTGAGATCGGTCACATCGATCGGAAAAGGATTAATGAAGCCCTAGATAAGCTAGTGGAGAAATCTTCTCCTTCGACTTCTAAGGGAATAAACGGCAAAGACAAGGATAGACTATCTGTGCCGTCCACTTCCGCCGGCAAGCAGCCTCACGATCACAGAGATACTCGAGCGTCTCTCCCCAAGAATAAATGCTCTGATGGTGCAATCACTTCAGAGATCAGTGAAAGTGAGTTGATACCGTTGGTTGGCATGGTTTTTGCCACTGAAGAGGACGGTTTTAGATTTTATAAGGAATATGCCAGAAGCACTGGGTTTGGTATTAGAAGAGATACCGTTCACAGAAGAAAGGATACAGGGGTCATTTTTGATAGAATTTTTTGCTGTTCAAGAGAAGGTCATTGGCGACATGATAAAAGAGATACGGAAGTTCAAAAGCACCGTGCTGAGACCAGGATTGGTTGTATGGCACGATTGAGGATTTTGATGAATGGCGAGGGAAAATTTGTGGTGTCGCAATTTGAACCAAAGCATAATCATCAGTTACTTTTGCCTAAGATGGCTCATATGTTAAGATCTCATAGGCAAGTAAGTGAGATCCAGGCTACGGAAATCGATTTAGCAGATAAAACAGGAATTGCGCCGAAAGCAATTGTAGAACTTATGCAAAGAGAAGCTGGGGGTGTTGATACTCTTGGATTTATGCATGCGGATTGTCAAAACTATTTGCGTTCGAAACGCACGACTGCCATAGAAGCTGGGCAGGCAGGGGCCTTGATTCAATATTTTGTTAAGAGGCAGGTAGAGGATCAATCATTTTTCTATTCTATTGAGCTCGACACTGAAGATTTGATAACAAGTCTTTTTTGGGCGGATGGAGGAATGATAGAGGATTATAAGGCTTTCGGTGACGTTGTATGTTTCGATACAACATATAAGACGAATAAGGAGGGCCGTATTTTTGGATTATTTGTTGGGGTAAATCATCATAGACAAAGTATTGTCTTTGGAGCAGCCTTACTTTATGATGAAACAATACCGACGTTTTGCTGGCTCTTCAAAACATTTGTTACAGCTATGTCTAGGAAAGAACCAAGAACACTTCTCACTGATCATGATCAAGCAATGACAAGTGCAATTGCTTGTGTATTACCAAGAACGTATCATCGTTTTTGTGTGTGGCACATGTTTCAGACCGCGGCAAAACATCTAAGTGATGTGTTTAATCGTGAGAAATCTTTTGCAAATGAATTTTCACGATGTGTGTACGAGTATGAGAATGAAGATGAGTTTGTGGATGCGTGGAATGCGATGATTACCAAATATAATCTGTCTGACAATAGTTGGTTGTAG 1383 41.36 MYRERGAGGSKSEIGHIDRKRINEALDKLVEKSSPSTSKGINGKDKDRLSVPSTSAGKQPHDHRDTRASLPKNKCSDGAITSEISESELIPLVGMVFATEEDGFRFYKEYARSTGFGIRRDTVHRRKDTGVIFDRIFCCSREGHWRHDKRDTEVQKHRAETRIGCMARLRILMNGEGKFVVSQFEPKHNHQLLLPKMAHMLRSHRQVSEIQATEIDLADKTGIAPKAIVELMQREAGGVDTLGFMHADCQNYLRSKRTTAIEAGQAGALIQYFVKRQVEDQSFFYSIELDTEDLITSLFWADGGMIEDYKAFGDVVCFDTTYKTNKEGRIFGLFVGVNHHRQSIVFGAALLYDETIPTFCWLFKTFVTAMSRKEPRTLLTDHDQAMTSAIACVLPRTYHRFCVWHMFQTAAKHLSDVFNREKSFANEFSRCVYEYENEDEFVDAWNAMITKYNLSDNSWL 460
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi12g00410 460 Pfam MULE transposase domain 315 408 IPR018289 -
Busi12g00410 460 Pfam FAR1 DNA-binding domain 105 193 IPR004330 -
Busi12g00410 460 MobiDBLite consensus disorder prediction 26 77 - -
Busi12g00410 460 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 91 460 IPR031052 GO:0006355(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi12g00410 K17604 zinc finger SWIM domain-containing protein 3
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr12:19283337 Busi13g00220 Busi-Chr13:9500224 dispersed
Busi Busi-Chr13:19967755 Busi12g00410 Busi-Chr12:19283337 dispersed
Busi Busi-Chr8:17787836 Busi12g00410 Busi-Chr12:19283337 dispersed
Busi Busi-Chr12:19179576 Busi12g00410 Busi-Chr12:19283337 proximal
Busi Busi-Chr1:69230275 Busi12g00410 Busi-Chr12:19283337 wgd
Busi Busi-Chr12:19283337 Busi2g02327 Busi-Chr2:72497404 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Busi MULE 2.2e-25 CL0219 TF FAR1