AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi12g00456 ATGCTGCCATCTTCTGGCAAGTATTCTGATACGGGATTTACAGTAAATGGTGTCAATTATGAAGGTAGCTTACTTTGTGTTGGAAACTTGCTAATGTCCTGGAGCCCCAAGAGATTCTCAGAGATTACTGCAGATAGGAGGTTTTATATTGAATTGGAATTGCGGATGGGTGTTAATATTCTAACTGAGAAATTAAATTTCTTGGTTTACCATCTTGACCTCGCAGTTTGTGGGGTCCACCCATTTTTGACCTCCCAGGTTACCTCTGGAGCCGCCATCAAATTTAAGCTTTACCCTCCTACTAAGTGGTGGATTGGAAGATCTGCTGAGCAGAATCTATATCGGATACCCTTAGAGATGACTTCCATTGTCTCATGGACTATTGTGCTGCATGAGTTTATCGAGAGTGCTGTAGATATGGATCTTATTCAAGGTGTGGTAGTTGGGAGGGGGGATGTGAGGGTATCTCATCTTCAGTTTGCAGATGATACACTAGTGTTTCTCAAATTAGAGAGGGAGCAGAGTCAATTGGAGGATGAGTACCTTGCTAGGGATCCTAGGTTGGTTGAGGTTGAGGAGTTAGCTTCTCTCCTTGACAAGTTGAAGGAGGTGGTTCTTGATGCTTCTACCCCTGATAGAGTCTTGTGGTCCCCTTCATCTTCCAGGACCTTCTCCTGTAACTCTTACTTCAGTCTTTTCCGGTCGGATAGGCTTGATCCTCCACCTCCATTCTTTGTGTCTCGTTTATGGAAGCCCAAAATTCCTCCTAAGATTAAGGCATTTCTATGGACAATTCTCTTTTACAGAATTAATACTGCTGACAGAATTCAGAAAAAAGTGAAGATGATGGCTTTATCCCTCATGTGTGTGTATTATTTTATCTCTCTTCCAACTGGTACGGCCTGTGCCAGGAGTGGGGTGAGGTTGCATCAAACAGAACTAGACAACTTCTTAATACAGACCGTTAGTTATACAATTTCATCCATGGTGATTCTGACACTTGGTCTCGATATCCGCGTGTTTTTTGGGTGGGAAATTTTGATTCTTGGCTGTGGAAGGAATAGCGAACCAGTGGATCCTGAACTTCGGCGCTTTATCCGGTCTACTGGAATGAAATTGGGCAAATTGACTCGGCCTGCCAGGGATAGAAGCTTTGACAAGTCTTGGGATGTGTATCAACAACCTTATGAGGCACGTCTTCACTTTGTATTTACAACTGTCAAACCAGGGTACTTGTACACCCTAAAGTCATATGTGCGCAATCGAGCACAACCGGAGGGGTCAATTGCGGAAGGGTATATTGCAGAAGAATGTATGATATTCTGTTCCCAATACTTACCTAACGTAGAATCAAAAACTAATCGGCCGCAAAGAAACTATGATGAAACTGCAATTGGAAGTGCCCAACCATATAAATTATCCAATATTGAGTGGGCACAAGTGCATCGTTATGTGCTTTTCAATGACGATAGGGTTGCAAGTTTTCGAATGCGTCATCTAAGCCTTCTTAAGATGTTAACTCCAAGGGCAAGGGAACATGACATACAAAAGAAACATAATAATGAATTCATGCAGTGGTTTAAAGAACATGCCGAGACACTAAAAGCATCAAATAGTGCCGTCTCCGAGGACATTATGTTGTTGTCACAAGGGCCACAATCAATGGCAAAAAAATTCAAGGGATACATAAGTAATGGATATCGTTTTTGCACGATGGAGAAAGAGAAATCCTCAAAGAGTTAG 1743 42.28 MLPSSGKYSDTGFTVNGVNYEGSLLCVGNLLMSWSPKRFSEITADRRFYIELELRMGVNILTEKLNFLVYHLDLAVCGVHPFLTSQVTSGAAIKFKLYPPTKWWIGRSAEQNLYRIPLEMTSIVSWTIVLHEFIESAVDMDLIQGVVVGRGDVRVSHLQFADDTLVFLKLEREQSQLEDEYLARDPRLVEVEELASLLDKLKEVVLDASTPDRVLWSPSSSRTFSCNSYFSLFRSDRLDPPPPFFVSRLWKPKIPPKIKAFLWTILFYRINTADRIQKKVKMMALSLMCVYYFISLPTGTACARSGVRLHQTELDNFLIQTVSYTISSMVILTLGLDIRVFFGWEILILGCGRNSEPVDPELRRFIRSTGMKLGKLTRPARDRSFDKSWDVYQQPYEARLHFVFTTVKPGYLYTLKSYVRNRAQPEGSIAEGYIAEECMIFCSQYLPNVESKTNRPQRNYDETAIGSAQPYKLSNIEWAQVHRYVLFNDDRVASFRMRHLSLLKMLTPRAREHDIQKKHNNEFMQWFKEHAETLKASNSAVSEDIMLLSQGPQSMAKKFKGYISNGYRFCTMEKEKSSKS 580
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi12g00456 580 SUPERFAMILY MTH938-like 7 48 IPR036748 -
Busi12g00456 580 Pfam zinc-binding in reverse transcriptase 224 279 IPR026960 -
Busi12g00456 580 Pfam Domain of unknown function (DUF4218) 411 459 IPR025452 -
Busi12g00456 580 PANTHER DUF4216 DOMAIN-CONTAINING PROTEIN 411 579 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi12g00456 K09008 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr12:20830680 Busi14g01546 Busi-Chr14:27464765 dispersed
Busi Busi-Chr12:20830680 Busi12g00458 Busi-Chr12:20932146 proximal