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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi12g00556 ATGACGAATCGCCGCTTCTGTTCCCTCGTCTTCCTCGTCGCCTTCCTCTCCGCTGCTGCAGGTGACTCTGATGAGTGTGTTTACACACTGTACATCAAAACAGGGTCCATCTTCAAAGCTGGAACCGACTCCAACATCAGCATCACTCTCGGAGATTCCGCCGGCCGGTCGGTGTGGATCCCGAATGTACAGGCCTGGGGTATGATGGGATCCCGCCATGACTACTTCGAGACGGGAAATCTCGACATTTTCAGTGGCAGAGGCCCCTGCATAGGAGCTCCCCTCTGCCGTCTACAGGTGGTGTCGGACGGTACCGGATCTCATCATGGGTGGTACTGCAGCTCCGTTGAGGTCACGTCCTCCGGGCCTGACAAGGGTTGCAGCCAGACCCTGTTTTACGTCAACCAGTGGCTCGCCACTGATGCAGCCCCCTACTCCCTGAAAGCTGTTGTTGATGGGTGCTTGAATGGAGAAGCTACTCCGGCGAAGCGTGATGAAGAGACAGGGCGTCTTGTTGTTGGGTTTAATCATCAGGGATCTGCTTCACAGTGA 552 55.8 MTNRRFCSLVFLVAFLSAAAGDSDECVYTLYIKTGSIFKAGTDSNISITLGDSAGRSVWIPNVQAWGMMGSRHDYFETGNLDIFSGRGPCIGAPLCRLQVVSDGTGSHHGWYCSSVEVTSSGPDKGCSQTLFYVNQWLATDAAPYSLKAVVDGCLNGEATPAKRDEETGRLVVGFNHQGSASQ 183
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi12g00556 183 Gene3D PLAT-LH2 domain 16 144 - -
Busi12g00556 183 ProSiteProfiles PLAT domain profile. 26 152 IPR001024 GO:0005515(InterPro)
Busi12g00556 183 Pfam Embryo-specific protein 3, (ATS3) 19 138 IPR010417 -
Busi12g00556 183 PANTHER PLAT DOMAIN-CONTAINING PROTEIN 21 159 - -
Busi12g00556 183 SUPERFAMILY Lipase-lipooxygenase domain (PLAT-LH2 domain) 27 141 IPR036392 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi12g00556 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr11:41827161 Busi12g00556 Busi-Chr12:28955054 dispersed
Busi Busi-Chr11:41832363 Busi12g00556 Busi-Chr12:28955054 dispersed
Busi Busi-Chr12:28955054 Busi8g00870 Busi-Chr8:13434900 wgd