AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Busi12g00564 | ATGAACTACGAGCAGCGGCTCAAAGTGGCGGCGGAGATCGTTCTGTCGAGCGATCGATGCGTCAACGAAGCGGAGCCGTTAAACTGTGCTGAATTTGGGGTTACGGCGTCAATGAAACCTCACCAGACCGAAGGAGTTTCATGGCTTATAAGAAGATACATGCTTGGCGTGAACGTCATTCTCGGTAGGTTTGGTTTCTTACTGTTCCTCATTTCTTCTGCCTACGTTTTCGTGCCTGGAGACGAGATGGGATTGGGGAAGACTTTACAAGCTATCACTTTCTTAAGCTATTTGAAATTCCATCAGAAGTTGCCTGGGCCATTTTTGGTATTATGTCCTCTGAGTGTAACGGATGGATGGATATCAGAAATAAACAAGTATGTTGGTGATAAGGAACACCGGCGGGCTCTACGCAGGACATTATTTATTCATGTAAATCAACAGGCCATACCGTCTGATGTAGGATTGTCTTTACCTTTTGAGGTGCTGTTGACAACATACGATGTGGCATTGATGGATCAAGATTTTCTTTGTCAAATTCCATGGCATTATGCAGTAATTGATGAAGCTCAACGTCTTAAAAATTCATCCAGTAATTTGCTGATTGACACTCCAGACATGATATTTTTGCTTTTCCTGACCCCAGAGCCTGTCAAAGGAGTTGAGTATCAGGTTCTCTATAATGTACTCAAAGAGCGTTTTGTAATGCCAAGGCGGTTGTTGATGACAGGTACCCCTATTCAGAATAATCTTTCTGAATTCTGGGCTTTGATGCATTTTTGCATGCCTTCCGTCTTTGGAACATTAGAACAGTTTCTCTCAACATTCAAGGAAGCTGGGAATCCTTTAGCAGGTCAGGATGCCGCGGAAGTTAAGAAACTATTCAAAATTTTAAAATATGTATCAGGAGCATTTATGCTTCGAAGAACAAAATCCATGCTTGTTGAGAGTGGATCTCTTGTGCTGCCACCTCTGACTGAGATTATTGTGATGGCCCCACTGGTTTCCTTGCAAAAGAAGGTGTATGCATCTATATTGAGAAGAGAGCTCCCTAAACTTCTTGCAGTTCATTCAGGAGCTTCTAATGTCCAATCCTTACAGAATATTGCAAAATGTGTGACTCAGGGCTTAAGTACCCTTATTTACAAGAACTCCATATTCCAAATTCCAAGTAATGGCATAGCGCTTCTGTTCACATCCCTTCTTTATGGTTTCTTCCCAAGCTCTCATCCTCACATGGTAACATTGAAGTGTGCAGAATTCAATTTTAGGGCCTTGGGTTGGGAGATGGTAATTCAGTTGCGGAAAGCATGCAGCCATCCTTACCTCTTCCCTGGTATTGAGCCTGAACCATATGAAGAGGGTGAACATCTGGTTCAGATAGGTTCTGAACTCACATCTATGTTGTCACTCATAGATACCTTAGTGCAGAAAAGGGCTAGCCCAATGCATGAGGCTCCCGCCATTGCGTTTGTCTGGGGAGGGTCTGATGTACGCAACCTTACCCCTGCAAGCGGAGAGGCTAGTGGTAAACTTATAGTATTGGACCAACTACTAAAGAGGCTTCATGAGACTGGACACCGTGTTCTGTTGTTTGCTCAGATGACCCAGACACTAGATATTCTGCAGGATTTTCTGGAGTTACGGAACTACTCTTATGAACGACTGGATGGATCTGTTCGAGCTGAAGAGCGTTTTGCTGCAATTAGAAGTTTCAGCCAGCATAATATAGATTCTCAAAGTGATCAGCATGGTGCATTCGTCTTTATGATCTCCACAAGAGCAGGAGGAGTTGGACTGAATCTTGTGGCTGCTGATACTCGATATAGCTGTAGGGCAATTAACTGTAGATTTGATTGCTTTCTGACAGGAACAGATTTCAGATTGTTGAGGGCGCAGAGTTCAGGTCTGGACAATCTTGGTGCAGATCATCAGTTTTCTGAACAGCATTTCCGACTTTATTGTCTTTCATGGATGTTGAAGGAGCTCTTTTCTGGAATTTTTGTGCAGGCTAGGACTGAACTTCATGGGCAAATTGATTTGCCTTGTATTGAGAATGACGATGAGGATGTTTCAAGTTTGATATTGAAAGGGATGAAAGGGATGAAGCTCATAAACTTGGATCATAAGCAGATTAGGGCTAGTAGAATGAAACCCCTCTCAATTGCATATCAGGTTATATTTTATGAGCAAGATTGGAACCCTCAGGTGGACAGGCAAGCTCTGCAGCGTGCACACCGTATCGGGCAGATGAACCATGTGATGGCTATAAACCTAATTACGAGATGCACAGTGGAAGAGGTCATCATGAGGAGGGCAGAGAGAAAGTTACAGCTCAGCCATAATGTGATAGGAGAGGCCAATACAGATGAGAATGCTAAACAAGAAGGTGCTGATGCCGTTGACCTGCGATCTGCAATATTTGGGCTGCATATGTTTGATCCTACAGATATGAATGATGAAAAATCCAGTGAAGCGAATATGTCAGTGTTGAATGATTTGGCTGAAAAGGTGATTGCAATGCGCCATGAAGTATCACATAAGGTTGACAGCAAGTTCGAGATAAATCCGAAGGAGATACTTAATGGTGACGATGCTTTGATGAAAAGTGGTTCTGCTTTTATTAATTTTGATCCCGGGCTTGAAGAGGCTTCATATAATTCATGGGTTGAAAAGTTTAAAGACGTGTCACAATCAGCTGATAGCTCCACTTTAGAGCTGATAAGTAAAAGAAGCTTGCCTGAGGAAAGATATCTAAAACATGAAAAGGCAAGGAAGGATGCTGAAGATAAGAAGCTTTCAAAGTGGGAAGCTCTTGGTTATCAATCATTAGCTGTGAAAAACCCCATCTCACCTGTTGATGGTGACCTGATGTCAGATTCAGGTTCCATGCAATTTGTTTATGGAGATTGTACATGTCCATCAAAGATTTGCCCTGCTGAGCCTAGTGTGATATTCAGTTGTGTTGATAATTCTGGAAATTGGGGCCGTGGGGGAATGTTTGACGCACTGGCCAAACTTTCAGCCAGTATACCTGATGCTTATCAACGAGCTTATGAATTTGGGGACCTTCATCTGGGTGATCTCCATCTCATAAAAATCAACGAGGATCATGATGAAAGGAGTATGGACAGGAGTTATCCTCTGTGGGTTGCTTTGGCTGTTGTACAATCATATAATCCCAGGCGTAAAGTTCCTCGCAGCAATATCTCCATTCCAGACCTGGAACAATGCCTGATGAAGGCGTCCTTTCTGCTGCTCAGAATTCTGCATCAATCCACATGCCACGAATTGGGTATCAAGATGGATCAAACCGGTCAGAATGGTATACTGTTGAGCGACTCCTACGAAAATATGCATCCATATATGCCATAA | 3375 | 42.93 | MNYEQRLKVAAEIVLSSDRCVNEAEPLNCAEFGVTASMKPHQTEGVSWLIRRYMLGVNVILGRFGFLLFLISSAYVFVPGDEMGLGKTLQAITFLSYLKFHQKLPGPFLVLCPLSVTDGWISEINKYVGDKEHRRALRRTLFIHVNQQAIPSDVGLSLPFEVLLTTYDVALMDQDFLCQIPWHYAVIDEAQRLKNSSSNLLIDTPDMIFLLFLTPEPVKGVEYQVLYNVLKERFVMPRRLLMTGTPIQNNLSEFWALMHFCMPSVFGTLEQFLSTFKEAGNPLAGQDAAEVKKLFKILKYVSGAFMLRRTKSMLVESGSLVLPPLTEIIVMAPLVSLQKKVYASILRRELPKLLAVHSGASNVQSLQNIAKCVTQGLSTLIYKNSIFQIPSNGIALLFTSLLYGFFPSSHPHMVTLKCAEFNFRALGWEMVIQLRKACSHPYLFPGIEPEPYEEGEHLVQIGSELTSMLSLIDTLVQKRASPMHEAPAIAFVWGGSDVRNLTPASGEASGKLIVLDQLLKRLHETGHRVLLFAQMTQTLDILQDFLELRNYSYERLDGSVRAEERFAAIRSFSQHNIDSQSDQHGAFVFMISTRAGGVGLNLVAADTRYSCRAINCRFDCFLTGTDFRLLRAQSSGLDNLGADHQFSEQHFRLYCLSWMLKELFSGIFVQARTELHGQIDLPCIENDDEDVSSLILKGMKGMKLINLDHKQIRASRMKPLSIAYQVIFYEQDWNPQVDRQALQRAHRIGQMNHVMAINLITRCTVEEVIMRRAERKLQLSHNVIGEANTDENAKQEGADAVDLRSAIFGLHMFDPTDMNDEKSSEANMSVLNDLAEKVIAMRHEVSHKVDSKFEINPKEILNGDDALMKSGSAFINFDPGLEEASYNSWVEKFKDVSQSADSSTLELISKRSLPEERYLKHEKARKDAEDKKLSKWEALGYQSLAVKNPISPVDGDLMSDSGSMQFVYGDCTCPSKICPAEPSVIFSCVDNSGNWGRGGMFDALAKLSASIPDAYQRAYEFGDLHLGDLHLIKINEDHDERSMDRSYPLWVALAVVQSYNPRRKVPRSNISIPDLEQCLMKASFLLLRILHQSTCHELGIKMDQTGQNGILLSDSYENMHPYMP | 1124 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Busi12g00564 | 1124 | Gene3D | - | 402 | 614 | IPR027417 | - | |
| Busi12g00564 | 1124 | SMART | helicmild6 | 540 | 749 | IPR001650 | - | |
| Busi12g00564 | 1124 | Pfam | SNF2-related domain | 41 | 200 | IPR000330 | GO:0005524(InterPro)|GO:0140658(InterPro) | |
| Busi12g00564 | 1124 | Gene3D | - | 18 | 207 | IPR038718 | - | |
| Busi12g00564 | 1124 | Gene3D | - | 218 | 321 | IPR038718 | - | |
| Busi12g00564 | 1124 | Pfam | Helicase conserved C-terminal domain | 511 | 607 | IPR001650 | - | |
| Busi12g00564 | 1124 | Gene3D | Leucine Aminopeptidase, subunit E, domain 1 | 961 | 1103 | IPR043472 | - | |
| Busi12g00564 | 1124 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 68 | 264 | IPR014001 | - | |
| Busi12g00564 | 1124 | SMART | ultradead3 | 34 | 272 | IPR014001 | - | |
| Busi12g00564 | 1124 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 33 | 309 | IPR027417 | - | |
| Busi12g00564 | 1124 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE | 31 | 477 | IPR031053 | GO:0003678(InterPro)|GO:0006281(InterPro)|GO:0006338(InterPro) | |
| Busi12g00564 | 1124 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 322 | 607 | IPR027417 | - | |
| Busi12g00564 | 1124 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 725 | 793 | IPR027417 | - | |
| Busi12g00564 | 1124 | SUPERFAMILY | Macro domain-like | 964 | 1084 | IPR043472 | - | |
| Busi12g00564 | 1124 | Gene3D | - | 719 | 855 | IPR027417 | - | |
| Busi12g00564 | 1124 | CDD | SF2-C-SNF | 509 | 760 | IPR049730 | - | |
| Busi12g00564 | 1124 | Pfam | SNF2-related domain | 226 | 367 | IPR000330 | GO:0005524(InterPro)|GO:0140658(InterPro) | |
| Busi12g00564 | 1124 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 514 | 692 | IPR001650 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Busi12g00564 | K20092 | chromodomain-helicase-DNA-binding protein 1-like [EC:5.6.2.-] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Busi | Busi-Chr12:28991380 | Busi5g00881 | Busi-Chr5:31687016 | dispersed | |
| Busi | Busi-Chr12:28991380 | Busi8g00867 | Busi-Chr8:13373924 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Busi11g01576 | . | 15 | 764 | DDM1 gene family | AT5G66750 | 69.423 | 0.0 | 1061.0 | |
| Busi11g01667 | . | 201 | 655 | DDM1 gene family | AT5G66750 | 23.121 | 8.41e-20 | 93.2 | |
| Busi12g00393 | . | 214 | 706 | DDM1 gene family | AT5G66750 | 25.091 | 8.10e-25 | 109.0 | |
| Busi12g00564 | . | 200 | 468 | DDM1 gene family | AT5G66750 | 33.634 | 3.91e-38 | 152.0 | |
| Busi13g00107 | . | 201 | 677 | DDM1 gene family | AT5G66750 | 31.456 | 1.48e-63 | 227.0 | |
| Busi13g00111 | . | 327 | 677 | DDM1 gene family | AT5G66750 | 32.584 | 8.54e-45 | 172.0 | |
| Busi1g01497 | . | 224 | 725 | DDM1 gene family | AT5G66750 | 24.02 | 1.03e-22 | 103.0 | |
| Busi2g00074 | . | 132 | 677 | DDM1 gene family | AT5G66750 | 31.624 | 1.14e-69 | 248.0 | |
| Busi2g00076 | . | 171 | 677 | DDM1 gene family | AT5G66750 | 30.88 | 2.82e-63 | 229.0 | |
| Busi2g00163 | . | 197 | 726 | DDM1 gene family | AT5G66750 | 37.565 | 1.35e-103 | 345.0 | |
| Busi2g00476 | . | 99 | 519 | DDM1 gene family | AT5G66750 | 34.188 | 3.92e-62 | 226.0 | |
| Busi2g01551 | . | 233 | 672 | DDM1 gene family | AT5G66750 | 26.58 | 3.08e-26 | 115.0 | |
| Busi3g01457 | . | 202 | 283 | DDM1 gene family | AT5G66750 | 44.211 | 2.72e-14 | 73.9 | |
| Busi4g01668 | . | 197 | 695 | DDM1 gene family | AT5G66750 | 39.105 | 3.04e-92 | 317.0 | |
| Busi5g00881 | . | 197 | 726 | DDM1 gene family | AT5G66750 | 43.258 | 3.04e-129 | 411.0 | |
| Busi5g01019 | . | 197 | 729 | DDM1 gene family | AT5G66750 | 40.536 | 7.09e-105 | 350.0 | |
| Busi5g01028 | . | 197 | 433 | DDM1 gene family | AT5G66750 | 48.361 | 2.48e-63 | 229.0 | |
| Busi5g01029 | . | 436 | 729 | DDM1 gene family | AT5G66750 | 34.727 | 3.61e-31 | 128.0 | |
| Busi5g01056 | . | 21 | 739 | DDM1 gene family | AT5G66750 | 38.714 | 3.23e-144 | 449.0 | |
| Busi6g00850 | . | 195 | 506 | DDM1 gene family | AT5G66750 | 40.127 | 2.39e-68 | 245.0 | |
| Busi7g00878 | . | 440 | 727 | DDM1 gene family | AT5G66750 | 36.859 | 2.14e-43 | 169.0 | |
| Busi7g00879 | . | 333 | 743 | DDM1 gene family | AT5G66750 | 34.157 | 2.38e-42 | 165.0 | |
| Busi8g00339 | . | 196 | 645 | DDM1 gene family | AT5G66750 | 40.426 | 2.22e-94 | 323.0 | |
| Busi8g00867 | . | 200 | 614 | DDM1 gene family | AT5G66750 | 30.798 | 3.90e-57 | 210.0 | |
| Busi8g01212 | . | 308 | 639 | DDM1 gene family | AT5G66750 | 26.225 | 7.23e-17 | 82.8 | |
| Busi9g00715 | . | 202 | 708 | DDM1 gene family | AT5G66750 | 28.265 | 5.17e-53 | 197.0 | |
| Busi9g01662 | . | 174 | 675 | DDM1 gene family | AT5G66750 | 28.067 | 3.59e-52 | 194.0 | |
| Busi9g02106 | . | 132 | 677 | DDM1 gene family | AT5G66750 | 29.293 | 8.12e-54 | 200.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Busi | SNF2_N | 1.6e-39 | CL0023 | TR | SNF2 |