AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi12g00581 ATGACCCCCAGATGGGTCTCCTCTATCTTCCCTCAAGTTCTTGGATTCACAAGGAGGTCCTTTCATTCATGGAGATTACCAGGGGAGTCAACGACGGCTTCCGCTCTCACCCATGGAATTCACGTCTTCCATTGCCCTGATGGAGTTGGGATCGTTGCGAAGTTATCGGATTGCATCGCTTCGAGGGGTGGAAATATACTCAGCGTCGATGTCTTCGTCCCTGAGAACAAGAACGTATTTTACTCAAGAAGTGAGTTTGTCTTCGACACTATTAGATGGCCTAGGGAGCAGATAGATGCTGACTTTCTCAAACTCTCAAAGTCTTTCAATGCCATGAGATGTGATGTTCGGGTGCCTGATCTTGACCCCAAATATAAGATTGCAGTTATGGCTTCAAAGCAGGACCATTGCCTGGTTGATTTGCTACATGGATGGCAAGATGGGAGGCTTCCGGTGCATATAACATGTGTAATAAGCAATCATGACAGAGGTCTAAATACACATGTAATAAGATTTCTCGAAAGGCATGGGATTCCATATCATTATTTGCCCACAACTTCAGGAAACAAAAGAGATGAAGAGATCTTGGATTTGGTTCATAATACTGATTTTCTAGTTCTTGCTAGATATATGCAGATACTATCTAGAAACTTTTTGGAGAGCTATGGGAAAGACGTTATTAACATTCACCACGGCCTTTTGCCATCATTCAAGGGTGGGAATCCAGCAAAACAGGCCTTTGATGCTGGTGTGAAATTGATTGGCGCAACTAGTCACTTTGTAACCGAAGAACTTGATGCAGGGCCAATTATTGAACAAATGGTTGAGAGAGTTTCCCATCGAGATAATTTGCTGAGCTTCGTGCAGAAATCAGAGAACCTGGAGAAACAATGCCTTGCAAAGGCAATAAAATCATACTGCGAGCTGCGAGTGCTACGTTATGAGGAGAAAAAGACTGTTGTCTTTTGA 969 43.34 MTPRWVSSIFPQVLGFTRRSFHSWRLPGESTTASALTHGIHVFHCPDGVGIVAKLSDCIASRGGNILSVDVFVPENKNVFYSRSEFVFDTIRWPREQIDADFLKLSKSFNAMRCDVRVPDLDPKYKIAVMASKQDHCLVDLLHGWQDGRLPVHITCVISNHDRGLNTHVIRFLERHGIPYHYLPTTSGNKRDEEILDLVHNTDFLVLARYMQILSRNFLESYGKDVINIHHGLLPSFKGGNPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLLSFVQKSENLEKQCLAKAIKSYCELRVLRYEEKKTVVF 322
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi12g00581 322 PIRSF FormyFH4-hydr 37 322 - -
Busi12g00581 322 SUPERFAMILY ACT-like 43 110 IPR045865 -
Busi12g00581 322 CDD ACT-F4HF-DF 40 111 IPR044074 -
Busi12g00581 322 PRINTS Formyltetrahydrofolate deformylase signature 273 295 IPR004810 GO:0006189(InterPro)|GO:0008864(InterPro)
Busi12g00581 322 PRINTS Formyltetrahydrofolate deformylase signature 295 320 IPR004810 GO:0006189(InterPro)|GO:0008864(InterPro)
Busi12g00581 322 PRINTS Formyltetrahydrofolate deformylase signature 41 67 IPR004810 GO:0006189(InterPro)|GO:0008864(InterPro)
Busi12g00581 322 PRINTS Formyltetrahydrofolate deformylase signature 126 148 IPR004810 GO:0006189(InterPro)|GO:0008864(InterPro)
Busi12g00581 322 PRINTS Formyltetrahydrofolate deformylase signature 148 175 IPR004810 GO:0006189(InterPro)|GO:0008864(InterPro)
Busi12g00581 322 Pfam Formyl transferase 126 303 IPR002376 GO:0009058(InterPro)
Busi12g00581 322 Gene3D - 38 121 - -
Busi12g00581 322 SUPERFAMILY Formyltransferase 126 317 IPR036477 GO:0009058(InterPro)
Busi12g00581 322 PANTHER FORMYLTETRAHYDROFOLATE DEFORMYLASE 11 322 IPR004810 GO:0006189(InterPro)|GO:0008864(InterPro)
Busi12g00581 322 CDD FMT-core-Formyl-FH4-Hydrolase-C 125 322 IPR041729 GO:0008864(InterPro)
Busi12g00581 322 Gene3D - 124 322 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi12g00581 K01433 formyltetrahydrofolate deformylase [EC:3.5.1.10]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr12:29355310 Busi8g00449 Busi-Chr8:6065388 wgd