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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi12g00619 ATGCTGTCTGGAGAAATGGCAAAAAGCTACTTTAAGCAAGAGCATGACCTAGGAATTGACAGGTACCTGGTCCCTGCTGATTTGACCGTCGGGCAATTTGTCTATGTAATCCGCAAGAGAATCAAGTTGAGTGCAGAGAAGGCAATATTCATTTTTGTAGACAATGTTCTTCCGCCGACAGGTGCAATAATGTCTGCCATATATGATGAAAAGAAGGACGAGGATGGGTTTCTGTATGTCACATACAGTGGCGAAAACACATTTGGGTTCGAGTGGATAACCCAGTGA 288 43.75 MLSGEMAKSYFKQEHDLGIDRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGFEWITQ 95
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi12g00619 95 SUPERFAMILY Ubiquitin-like 14 89 IPR029071 -
Busi12g00619 95 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A-1B LIGHT CHAIN 3-RELATED 12 89 IPR004241 GO:0006995(PANTHER)
Busi12g00619 95 Gene3D - 3 89 - -
Busi12g00619 95 Pfam Autophagy protein Atg8 ubiquitin like 15 89 IPR004241 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi12g00619 K08341 GABA(A) receptor-associated protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr10:3183530 Busi12g00619 Busi-Chr12:29980589 dispersed
Busi Busi-Chr10:3176913 Busi12g00619 Busi-Chr12:29980589 dispersed
Busi Busi-Chr12:29980589 Busi4g00234 Busi-Chr4:1997191 dispersed
Busi Busi-Chr12:29980589 Busi8g00392 Busi-Chr8:5431163 wgd