AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi12g00649 ATGTACGATGACATAGCAGGGAATGAGCTCAATCCAAGGCCTGGGACTATTATCAACCGTCCAGATGGTCCAGATGTCTACGCCGGTGTGCCTAAGGACTACACTGGGGAGAATGTCACTGCTAAGAACCTGTATGCAGTGCTTCTTGGTGATAAGAGTGCTGTGCAAGGTGGAAGTGGGAAGCTGGTCAATAGCAAACCCAATGACAGGATATTTCTCTACTACTCTGATCATGGAGGCTCAGGAATTCTTGGAATGCCTAATACGCCCTACATCTATGCCGTTGATTTCGTGGAGGTCTTAAGGAAGAAACATGCATCTGGTGGCTACAAAGAGATGTTAATATACATAGAGGCTTGTGAGAGTGGAAGTATGTTTGAAGGCTTAATGCCTGAAGACCTTAATATTTATGTCACCACAGCATCAAATGCCGAGGAGAACAGTTGGGGAACTTATTGTCCTGGGATGCACCCTTCTCCACCTTCAGAGTTCATGACTTGCTTGGGGGACTTGTACAGTGTGGCATGGATGGAAGACAGTGAGACACACGATCTAAAGAAGGAAAGCATACGTCAACAGTTTCAGAGAGTAAAGGCCCGGACTTCCAACCGCAACACTTACAATGCAGGGTCACATGTAAAGGAATATGGTAACAAAAGTATGAAACCTGAGAAGCTTTATATGTATCAAGGATTTGATCCCGCCAATCAAAACAGCAATGAGAACACTCTTCACAGTGATGCCCATACTGAAGTTGTTAACCAAAGAGATGCAGATCTTCTTTTCTTATGGCAGTGGTACTATAGGTCACAAGATGGATCTCACAAGAAGAATGAAATTCTCAGGCAGATAACAGAGACCATGATGCAAAGAATGCATATTGATGATAGCATTGAGATCACTTCTTTTAGGGCAGAAAAAAGTCCACCCATCCTCAATGCTGTGAGACCACATGGTCAGCCCTTGGTTGACGACTGGAGTTGCTTGAAAGCAATGGTGAAATTATTTGAGACCTACTGTGGGTCGCTTACTCAGTATGGCATGAAACACATGCGGGCATTTGCTAACATTTGTAACAGTGGGATCTCTGAAAGGTTGATGGAGCCAGCCTGTATGACTGCTTGTAGAAACCACCAATCTATGCAATGGAGTTTTGAAGCAAGGGTACAGTGCTTGAACATTATCCGGATGCCATAG 1197 44.36 MYDDIAGNELNPRPGTIINRPDGPDVYAGVPKDYTGENVTAKNLYAVLLGDKSAVQGGSGKLVNSKPNDRIFLYYSDHGGSGILGMPNTPYIYAVDFVEVLRKKHASGGYKEMLIYIEACESGSMFEGLMPEDLNIYVTTASNAEENSWGTYCPGMHPSPPSEFMTCLGDLYSVAWMEDSETHDLKKESIRQQFQRVKARTSNRNTYNAGSHVKEYGNKSMKPEKLYMYQGFDPANQNSNENTLHSDAHTEVVNQRDADLLFLWQWYYRSQDGSHKKNEILRQITETMMQRMHIDDSIEITSFRAEKSPPILNAVRPHGQPLVDDWSCLKAMVKLFETYCGSLTQYGMKHMRAFANICNSGISERLMEPACMTACRNHQSMQWSFEARVQCLNIIRMP 398
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi12g00649 398 PRINTS Hemoglobinase (C13) cysteine protease signature 33 48 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Busi12g00649 398 PRINTS Hemoglobinase (C13) cysteine protease signature 110 126 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Busi12g00649 398 PRINTS Hemoglobinase (C13) cysteine protease signature 61 80 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Busi12g00649 398 Pfam Legumain, prodomain 283 375 IPR048501 -
Busi12g00649 398 Gene3D - 1 254 - -
Busi12g00649 398 PANTHER HEMOGLOBINASE FAMILY MEMBER 1 375 IPR001096 GO:0004197(PANTHER)|GO:0006508(InterPro)|GO:0006624(PANTHER)|GO:0008233(InterPro)|GO:0051603(PANTHER)
Busi12g00649 398 Gene3D - 255 385 IPR046427 -
Busi12g00649 398 FunFam Vacuolar-processing enzyme beta-isozyme 255 380 - -
Busi12g00649 398 Pfam Peptidase C13 family 1 231 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Busi12g00649 398 CDD legumain-C 257 368 IPR048501 -
Busi12g00649 398 PIRSF Legumain 1 390 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Busi12g00649 398 PIRSF AE 1 390 IPR043577 GO:0004197(InterPro)|GO:0051603(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi12g00649 K01369 legumain [EC:3.4.22.34]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr12:30430189 Busi7g00265 Busi-Chr7:2712269 dispersed
Busi Busi-Chr12:30430189 Busi13g01196 Busi-Chr13:35935610 transposed