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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi1g00065 ATGACAGGAGGACAAGAAGGTGATGCAAGTGGTAGGTCAAAGCAGAGCAGAAGCGAAAAGAAGAGTCGCAAGGCAATGTTGAAGCTTGGAATGAAGCCAATCTCCGGTGTCAGCCGTGTCACTGTCAAGAAGAGCAAAAACATTTTGTTTGTCATCTCAAAGCCTGATGTTTTCAAGAGCCCCACGTCAGACACATATGTTATCTTTGGGGAGGCAAAGATTGAGGACTTGAGCTCACAACTGCAGTCCCAGGCGGCGGAGCAGTTCAAGGCTCCTGATCTCAGTACTGTAATACCCAAGCCTGAGTCGTCAGCTGTGGCTCAGGACGACGAAGATGTGGATGAGACCGGGGTGGAGCCGAAGGATATAGAGTTGGTAATGACCCAAGCAGGTGTCTCGAGGTCGAAAGCTGTGAAGGCACTGAAGGCTGCTGATGGGGATATTGTTTCAGCCATCATGGAGCTAACAAACTGA 474 49.79 MTGGQEGDASGRSKQSRSEKKSRKAMLKLGMKPISGVSRVTVKKSKNILFVISKPDVFKSPTSDTYVIFGEAKIEDLSSQLQSQAAEQFKAPDLSTVIPKPESSAVAQDDEDVDETGVEPKDIELVMTQAGVSRSKAVKALKAADGDIVSAIMELTN 157
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi1g00065 157 Gene3D - 25 78 IPR038187 -
Busi1g00065 157 PIRSF NAC-alpha 2 157 - -
Busi1g00065 157 Pfam NAC domain 19 74 IPR002715 -
Busi1g00065 157 Pfam HYPK UBA domain 117 156 IPR044034 -
Busi1g00065 157 CDD UBA-NAC-euk 120 156 - -
Busi1g00065 157 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 6 156 IPR016641 GO:0005737(PANTHER)|GO:0005854(InterPro)|GO:0006612(PANTHER)|GO:0051082(PANTHER)
Busi1g00065 157 CDD NAC-NACA 30 77 - -
Busi1g00065 157 Gene3D - 118 155 - -
Busi1g00065 157 FunFam Nascent polypeptide-associated complex (NAC), alpha subunit 26 78 - -
Busi1g00065 157 FunFam Putative nascent polypeptide-associated complex subunit alpha 118 155 - -
Busi1g00065 157 ProSiteProfiles NAC A-B domain profile. 16 81 IPR002715 -
Busi1g00065 157 SMART NAC-2 19 75 IPR002715 -
Busi1g00065 157 MobiDBLite consensus disorder prediction 1 25 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi1g00065 K03626 nascent polypeptide-associated complex subunit alpha
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr12:39356461 Busi1g00065 Busi-Chr1:2390474 dispersed
Busi Busi-Chr12:39425669 Busi1g00065 Busi-Chr1:2390474 dispersed