AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi1g02838 ATGCGTGACCTTCTCATTAGCCGTTTTGGGTTCCAACCCAATGATATCGAGCTCCTGACCGATGCGCCAGGTTCAGCAGTTATGCCCACAGGTTCCAACATCATGAGCGCATTGAACCGAATGGTTGATGGAGCTGAGCCGGGTGATGTGTTGTTCTTCGACTACAGTGGGCATGGAACACGGATCCCGTCCGTGAAGCCAATGCATCCCTTTAGACAGGATGAGGCTATAGTCCCTTGTGACTTCAATCTCCTAACTGCTTTGCAGGTGACCGAGTTAACTCGGCATGGATGCACTTACGTAGACTTCCGGAAACTTGTGAACCGCTTACCAAATGGCGCAAGCTTCACCATCCTTTCAGATTCATGCCACAGTGGTGGCCTCATTGACAAGGAAAAAGAGCAAATCGGCCCTTCTTCCGAAACAAAAAACTGCCCACTATCGTCTGGTCGACCAAAATCTATCCCTTTTGAATCCATCCTGCATCACTTCAATTCCATCACCAGCGTCAGCTCATCAGACATTGGCATTCACCTGCATGAGGTTTTTGGTAGTGAAGCAAGTGTCAAGTTCAATTTAAAGGAGCGAGAACTTGAAACATTAGGGTCAGTAAGGCCTGACGCAGGAATACTACTAAGTGGGTGCCAAGCAAACGAGACTTCTGCAGACATGAATCCGACTACAGAGGGAGGGAAGGCATATGGGGCCTTCAGTAATGCTGTCCAGATGGTTTTGAAGGGGCATACAGACCCTCTCAGTAATAGAGAGTTGATCACTCTCACTAGGAAGATCTTGCAAGCACAAGGGTTTGACCAACACCCTTGCTTGTACTGCAGTGATGAGAATGCTGATGTACCTTTCTTATGGCAACCCAACCGTTGA 882 48.3 MRDLLISRFGFQPNDIELLTDAPGSAVMPTGSNIMSALNRMVDGAEPGDVLFFDYSGHGTRIPSVKPMHPFRQDEAIVPCDFNLLTALQVTELTRHGCTYVDFRKLVNRLPNGASFTILSDSCHSGGLIDKEKEQIGPSSETKNCPLSSGRPKSIPFESILHHFNSITSVSSSDIGIHLHEVFGSEASVKFNLKERELETLGSVRPDAGILLSGCQANETSADMNPTTEGGKAYGAFSNAVQMVLKGHTDPLSNRELITLTRKILQAQGFDQHPCLYCSDENADVPFLWQPNR 293
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi1g02838 293 Gene3D - 1 157 - -
Busi1g02838 293 Gene3D - 169 287 - -
Busi1g02838 293 PANTHER METACASPASE-4 1 288 IPR050452 -
Busi1g02838 293 Pfam Caspase domain 1 280 IPR011600 GO:0004197(InterPro)|GO:0006508(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi1g02838 K22684 metacaspase-1 [EC:3.4.22.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr1:57420263 Busi1g02838 Busi-Chr1:84281717 dispersed
Busi Busi-Chr1:84281717 Busi10g01688 Busi-Chr10:41512334 wgd