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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi8g00355 ATGGCTACTGTTGTATCATGCAATGGCGGAGAAGAAGAACATATGAGGAAGTGGGACCGGTCATCAGGCAACTTCAGTAGTGACTCTTGGCGATCGAGCCAAGCTGGAGCACGACATGAGGCAGTCCGCATGGCTCGTGGTGGGATCTTGCATGCAATGAAATGGGCTCAGTCGTTCTTGAGACCAGAGACAACGGATGGGGAAGTGGGTCGTGATGATTCTGCTTGGAATGATTGTGTGAAGCTTTACGATGAGAGCGAGTACAGGCTTAGACGTCTGCTCTCTCCTCATGAAGACGACGATGCGCGTACATGGCTGAGTGGTGCTCTTGCGAGCCATAGAACTTGTTTGGTCGGCCTTCACGAGAGGGGCTCTTCTGCTCCTGAAACTGCTCACAACCTGACTGTTTTGCTTGGGAAAGCTCTTGCTATCTATCGACTAAAAACTCATGCTAGAGAACGTCAAATGAAGACTAGGGAAGCTTCACCCGCTTATTTTCAAGTTTTTGGGGTCCGTTCAATTTGTAACAAAAATAGGTTCATCGTTTTCGTGCTTAGGTACAGGGAGACCACCATCAAATGTAAATCAGGGCTTCTAGTGTCATGGAATGCAAATACCTCTAAGGCTGATTATGTAGTAGCCAAAGACGGATCCGGAAACTTTAACACCATCAACGAAGCAGTGAATGCAATCACCAAAACGCGTCCAAGGCCGCAAAGGAGGGTGATAATCTATGTGAAAGCAGGAGTGTACAATGAGAACGTGGAAATCAAGAGGGGAATTAGGAACGTGATGCTGGTTGGCGATGGCATCGACAGAACGATTGTCACCAATGCCCGGAACGTCCACGACGGTGTAACCACATTAAGTTCGGCCACTTTTGGAGTGTCTGGTGATGGTTTCTGGGCAAGAGACATCACATTTGAGAACACAGCAGGGCCTGCCAAACATCAGGCCGCTGCGCTGAGGGTGAGCTCCGACTTGTCTGTTTTCTACCGATGTAGCTTCAAGGGGTATCAAGACACCCTCTATGTACACTCCCAAAGGCAATTCTACCGTGACTGCCACGTTTATGGTACAATAGACTTCATTTTCGGCGATGCTGCAGCAGTGTTGCAGAACTGTGACATTTATGTAAGGAAACCCCTGGACAACCAAGCCAACATGATAACTGCACAGGGAAGGGATAACCAGAATGAGAATACCGGGATCTCCATACATGGATCCCGTGTTGCACCTGCACCCGATCTCAGAGCTGCGAAGGGATCCTGCAGAAGTTACTTGGGTCGGCCATGGAGGAAATACTCCAGAACAGTATTTCTGAAGACAGACCTGGATGGTATCATTGATCCAAAGGGGTGGACAGAGTGGCGTGGCGAATTTGCCTTATCCACTCTTTTCTACGGCGAGTACATGAATACAGGCATCGGAGCTTCTACCAGCAGCAGAGTGAAATGGCCAGGGTTTCATGTGTTGAATAATCCCCAAGAAGCCGAGCCTTTCACGGTTAGTAAGTTCATACAGGGAGACTCGTGGATTCCTGCAACAGGAGTGCCTTTCTTGGCCGGTATCTAA 1575 48.89 MATVVSCNGGEEEHMRKWDRSSGNFSSDSWRSSQAGARHEAVRMARGGILHAMKWAQSFLRPETTDGEVGRDDSAWNDCVKLYDESEYRLRRLLSPHEDDDARTWLSGALASHRTCLVGLHERGSSAPETAHNLTVLLGKALAIYRLKTHARERQMKTREASPAYFQVFGVRSICNKNRFIVFVLRYRETTIKCKSGLLVSWNANTSKADYVVAKDGSGNFNTINEAVNAITKTRPRPQRRVIIYVKAGVYNENVEIKRGIRNVMLVGDGIDRTIVTNARNVHDGVTTLSSATFGVSGDGFWARDITFENTAGPAKHQAAALRVSSDLSVFYRCSFKGYQDTLYVHSQRQFYRDCHVYGTIDFIFGDAAAVLQNCDIYVRKPLDNQANMITAQGRDNQNENTGISIHGSRVAPAPDLRAAKGSCRSYLGRPWRKYSRTVFLKTDLDGIIDPKGWTEWRGEFALSTLFYGEYMNTGIGASTSSRVKWPGFHVLNNPQEAEPFTVSKFIQGDSWIPATGVPFLAGI 524
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi8g00355 524 FunFam Pectinesterase 204 524 - -
Busi8g00355 524 CDD PMEI-like-4 26 149 - -
Busi8g00355 524 ProSitePatterns Pectinesterase signature 1. 238 257 IPR018040 -
Busi8g00355 524 Gene3D - 204 524 IPR012334 -
Busi8g00355 524 SUPERFAMILY Pectin lyase-like 206 523 IPR011050 -
Busi8g00355 524 SMART PMEI-2 24 144 IPR006501 GO:0004857(InterPro)
Busi8g00355 524 Pfam Plant invertase-pectin methylesterase inhibitor 41 144 IPR006501 GO:0004857(InterPro)
Busi8g00355 524 Gene3D Invertase-pectin methylesterase inhibitor family protein 25 147 IPR035513 -
Busi8g00355 524 SUPERFAMILY Plant invertase-pectin methylesterase inhibitor 35 146 IPR035513 -
Busi8g00355 524 ProSitePatterns Pectinesterase signature 2. 357 366 IPR033131 -
Busi8g00355 524 MobiDBLite consensus disorder prediction 1 32 - -
Busi8g00355 524 PANTHER PECTINESTERASE 70 515 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Busi8g00355 524 Pfam Pectinesterase 211 510 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi8g00355 K01051 pectinesterase [EC:3.1.1.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr8:4944301 Busi8g00990 Busi-Chr8:15825316 dispersed
Busi Busi-Chr8:4944301 Busi8g00348 Busi-Chr8:4950301 tandem
Busi Busi-Chr14:14451117 Busi8g00355 Busi-Chr8:4944301 transposed
Busi Busi-Chr3:9432487 Busi8g00355 Busi-Chr8:4944301 transposed
Busi Busi-Chr12:30434757 Busi8g00355 Busi-Chr8:4944301 wgd
Busi Busi-Chr5:35143141 Busi8g00355 Busi-Chr8:4944301 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Busi10g00149 . 13 380 Carbohydrate Esterase gene family AT5G55590 56.757 1.20e-137 395.0
Busi10g00396 . 2 511 Carbohydrate Esterase gene family AT1G11580 55.166 0.0 572.0
Busi10g01620 . 67 388 Carbohydrate Esterase gene family AT1G05310 68.944 6.72e-178 498.0
Busi10g01719 . 67 388 Carbohydrate Esterase gene family AT1G05310 68.944 1.68e-177 498.0
Busi11g00775 . 33 549 Carbohydrate Esterase gene family AT5G09760 66.538 0.0 729.0
Busi11g01421 . 2 141 Carbohydrate Esterase gene family AT1G49660 51.773 9.38e-37 140.0
Busi11g01422 . 3 325 Carbohydrate Esterase gene family AT3G48700 46.13 2.49e-97 301.0
Busi11g01423 . 193 330 Carbohydrate Esterase gene family AT3G48700 38.406 3.95e-28 105.0
Busi11g01434 . 68 729 Carbohydrate Esterase gene family AT5G36210 71.852 0.0 1013.0
Busi11g01442 . 70 729 Carbohydrate Esterase gene family AT5G36210 72.741 0.0 1014.0
Busi11g01828 . 41 342 Carbohydrate Esterase gene family AT5G16080 34.675 1.81e-48 172.0
Busi11g01901 . 485 621 Carbohydrate Esterase gene family AT5G36210 29.371 5.02e-06 48.1
Busi12g00099 . 16 396 Carbohydrate Esterase gene family AT4G19420 61.576 0.0 551.0
Busi12g00301 . 64 361 Carbohydrate Esterase gene family AT5G61570 57.367 6.75e-125 362.0
Busi12g00317 . 130 268 Carbohydrate Esterase gene family AT5G61570 57.746 7.20e-53 172.0
Busi12g00652 . 65 511 Carbohydrate Esterase gene family AT2G45220 64.783 0.0 603.0
Busi12g00660 . 47 216 Carbohydrate Esterase gene family AT1G53830 28.488 9.86e-18 84.7
Busi12g00910 . 1 393 Carbohydrate Esterase gene family AT3G09410 46.682 3.47e-128 376.0
Busi12g00982 . 35 405 Carbohydrate Esterase gene family AT5G23870 62.791 1.61e-177 497.0
Busi12g01206 . 458 709 Carbohydrate Esterase gene family AT5G36210 25.094 3.10e-09 55.8
Busi12g01209 . 355 510 Carbohydrate Esterase gene family AT5G53370 81.41 2.26e-96 288.0
Busi13g00215 . 85 549 Carbohydrate Esterase gene family AT5G09760 56.41 0.0 526.0
Busi13g01407 . 7 359 Carbohydrate Esterase gene family AT1G69940 56.303 6.23e-131 404.0
Busi13g01422 . 37 592 Carbohydrate Esterase gene family AT3G14310 71.505 0.0 805.0
Busi13g01424 . 33 547 Carbohydrate Esterase gene family AT2G26440 66.214 0.0 689.0
Busi14g00357 . 1 460 Carbohydrate Esterase gene family AT3G27320 68.257 0.0 655.0
Busi14g00694 . 45 427 Carbohydrate Esterase gene family AT5G15860 70.235 0.0 582.0
Busi14g00786 . 16 331 Carbohydrate Esterase gene family AT1G68620 48.78 1.38e-107 315.0
Busi14g01255 . 8 511 Carbohydrate Esterase gene family AT2G45220 56.098 0.0 564.0
Busi14g01273 . 195 509 Carbohydrate Esterase gene family AT2G45220 54.085 6.09e-112 333.0
Busi14g01815 . 231 538 Carbohydrate Esterase gene family AT1G02810 46.006 4.88e-78 247.0
Busi1g01906 . 7 284 Carbohydrate Esterase gene family AT2G41530 67.55 8.11e-152 425.0
Busi1g02314 . 15 231 Carbohydrate Esterase gene family AT1G68620 39.462 2.36e-47 158.0
Busi2g00474 . 7 225 Carbohydrate Esterase gene family AT2G41530 83.562 8.24e-141 393.0
Busi2g01742 . 67 388 Carbohydrate Esterase gene family AT1G05310 51.026 3.29e-121 357.0
Busi2g02301 . 179 242 Carbohydrate Esterase gene family AT5G14310 40.625 9.19e-08 50.8
Busi3g00330 . 1 460 Carbohydrate Esterase gene family AT3G27320 64.627 0.0 635.0
Busi3g00906 . 65 305 Carbohydrate Esterase gene family AT5G07420 28.916 1.28e-22 92.8
Busi3g00953 . 42 398 Carbohydrate Esterase gene family AT5G15860 68.586 0.0 537.0
Busi3g01331 . 26 310 Carbohydrate Esterase gene family AT1G24793 59.93 1.77e-125 359.0
Busi4g00551 . 24 218 Carbohydrate Esterase gene family AT1G68620 40.299 4.19e-45 152.0
Busi4g00552 . 247 342 Carbohydrate Esterase gene family AT3G05120 38.144 8.44e-15 66.6
Busi4g01774 . 4 558 Carbohydrate Esterase gene family AT3G05610 57.699 0.0 709.0
Busi4g01788 . 4 565 Carbohydrate Esterase gene family AT3G05610 57.867 0.0 722.0
Busi5g00521 . 30 138 Carbohydrate Esterase gene family AT3G16970 33.929 1.71e-16 74.3
Busi5g01199 . 187 388 Carbohydrate Esterase gene family AT1G05310 48.02 3.49e-69 215.0
Busi5g01235 . 82 388 Carbohydrate Esterase gene family AT1G05310 39.432 3.32e-74 233.0
Busi5g01394 . 77 518 Carbohydrate Esterase gene family AT4G02320 49.89 2.35e-148 429.0
Busi5g01398 . 1 567 Carbohydrate Esterase gene family AT3G05610 56.477 0.0 699.0
Busi5g01468 . 23 415 Carbohydrate Esterase gene family AT3G05910 66.504 0.0 586.0
Busi6g00017 . 26 131 Carbohydrate Esterase gene family AT3G16970 33.636 6.93e-15 65.1
Busi6g00029 . 52 416 Carbohydrate Esterase gene family AT5G26670 75.616 0.0 596.0
Busi6g00045 . 11 571 Carbohydrate Esterase gene family AT5G49180 45.789 9.71e-177 509.0
Busi6g00119 . 13 325 Carbohydrate Esterase gene family AT2G19150 42.424 3.80e-76 235.0
Busi6g00202 . 7 567 Carbohydrate Esterase gene family AT4G02330 56.918 0.0 654.0
Busi6g00203 . 1 538 Carbohydrate Esterase gene family AT3G05620 58.564 0.0 641.0
Busi6g00206 . 33 518 Carbohydrate Esterase gene family AT4G02320 56.74 0.0 568.0
Busi6g00207 . 33 518 Carbohydrate Esterase gene family AT4G02320 54.93 0.0 532.0
Busi6g00246 . 49 211 Carbohydrate Esterase gene family AT3G05610 25.0 1.06e-14 69.7
Busi6g00623 . 460 695 Carbohydrate Esterase gene family AT5G36210 26.357 3.85e-21 97.1
Busi7g00009 . 5 561 Carbohydrate Esterase gene family AT3G10710 53.697 0.0 620.0
Busi7g00307 . 61 357 Carbohydrate Esterase gene family AT5G47500 51.007 3.58e-105 312.0
Busi7g00598 . 28 339 Carbohydrate Esterase gene family AT5G16080 38.365 3.15e-66 209.0
Busi8g00008 . 41 153 Carbohydrate Esterase gene family AT3G10720 58.407 7.39e-40 134.0
Busi8g00009 . 502 581 Carbohydrate Esterase gene family AT5G53370 53.75 5.82e-24 92.4
Busi8g00139 . 36 344 Carbohydrate Esterase gene family AT5G16080 36.76 4.47e-55 181.0
Busi8g00142 . 92 228 Carbohydrate Esterase gene family AT5G16080 42.029 1.82e-27 105.0
Busi8g00143 . 41 342 Carbohydrate Esterase gene family AT5G16080 33.121 6.30e-44 152.0
Busi8g00144 . 41 342 Carbohydrate Esterase gene family AT5G16080 32.166 7.36e-43 149.0
Busi8g00346 . 2 417 Carbohydrate Esterase gene family AT2G45220 63.679 0.0 548.0
Busi8g00348 . 1 511 Carbohydrate Esterase gene family AT2G45220 61.494 0.0 669.0
Busi8g00350 . 59 215 Carbohydrate Esterase gene family AT3G14310 29.268 2.48e-22 94.4
Busi8g00351 . 59 219 Carbohydrate Esterase gene family AT3G14310 32.927 1.78e-20 87.0
Busi8g00352 . 53 213 Carbohydrate Esterase gene family AT3G14310 29.448 9.15e-21 87.8
Busi8g00355 . 29 519 Carbohydrate Esterase gene family AT3G60730 58.384 0.0 566.0
Busi8g00356 . 62 223 Carbohydrate Esterase gene family AT1G53830 30.488 4.98e-20 89.4
Busi8g00635 . 48 143 Carbohydrate Esterase gene family AT4G02300 29.808 2.79e-07 46.6
Busi8g00990 . 1 598 Carbohydrate Esterase gene family AT3G49220 64.648 0.0 798.0
Busi8g01009 . 1 598 Carbohydrate Esterase gene family AT3G49220 61.502 0.0 747.0
Busi8g01426 . 106 387 Carbohydrate Esterase gene family AT4G19420 57.485 6.22e-135 389.0
Busi8g01481 . 38 159 Carbohydrate Esterase gene family AT4G19420 56.557 7.52e-43 143.0
Busi8g01486 . 11 397 Carbohydrate Esterase gene family AT4G19420 53.178 0.0 518.0
Busi8g01677 . 239 363 Carbohydrate Esterase gene family AT3G05620 39.416 5.80e-21 91.7
Busi9g00139 . 485 617 Carbohydrate Esterase gene family AT5G36210 29.927 7.46e-06 47.8
Busi9g00463 . 60 359 Carbohydrate Esterase gene family AT5G47500 28.846 5.56e-44 153.0
Busi9g00566 . 26 131 Carbohydrate Esterase gene family AT3G16970 33.636 2.67e-15 66.2
Busi9g00681 . 4 327 Carbohydrate Esterase gene family AT3G48700 47.546 7.76e-101 299.0
Busi9g00692 . 4 327 Carbohydrate Esterase gene family AT3G48700 47.239 8.60e-99 295.0
Busi9g00693 . 4 327 Carbohydrate Esterase gene family AT3G48700 45.872 1.48e-98 293.0