AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi8g00357 ATGGAATCAAAGATGTCATCTTCTTCTGCCTTTTCACTGGACCACTTCTCTCCCTCCGAGCAGCTCTGTTATGTCCACTGCACCTTTTGCGACACCGTTCTCGCAGTAAGCGTTCCTTGCAGCAGTTTGTTCAAGATTGTTACGGTTCGATGCGGACACTGCACCAACCTCCTATCAGTCAACATGCGTGGATTACTTCTGCCTGCAGCTAATCAGCTTCATCTTGGCCATGCTTTCTTCCCTCCTTCCCAGAGTCTTTTGGAAGAGATACCCAGTGCACCACCGAATATGCCAATGGATCATCGCAACCAAAACGAATCGATGCTATCAGGTCGAGGAGAAGCTGATGAACTCCCTAGACCTCCTGTTGTTAACAGACGTGAGATACTCCAACATCCTATCTTTATTTTCCACATACCTTTCAGCAGAATGAATTTGCCTCTGAAGAAGACGTTTACTTCCTTGGCAGTCCTCCGGAGAAGAGACAGAGAGTCCCATCCGCGTACAACCGATTCATCAAACGGTATGACAGGGATTCATGATTTTGACACCGATCTTTTAATCCGCAGGGACGAGATCCAACGCATTAAGGCCGGAAATCCCGACATAACGCACAGAGAGGCCTTCAGCGCCGCTGCAAAGAACTTTTCCTTCGCAATGGTTCCCCTTTCCTGTCTTGACTTCTGGGGATGTTTCTTCCAGTGGGCCCACTTCCCACACATCCACTTCGGTCTCATGCGCGATCAGGCTGTTAAGAAAACTAACGTGCGCCAACAGGAAGCAGATGACGTTCTTTTGAAGGATGGGTTTTTTGCTTCAGCTAATGTCGGTGTCTCACCTATTTTGGAGGAGGTTGTTGACAATCATGAATTCTTGGCTTCTGGTGTGCTAAGTGCAGGGAAAGGGGTCTTCAAGCAATGTAGTACCTTCATGCGTACAATGGATGACCGATCTGCTTTCTTCCAGACTGTTCTTCGTTCA 981 48.01 MESKMSSSSAFSLDHFSPSEQLCYVHCTFCDTVLAVSVPCSSLFKIVTVRCGHCTNLLSVNMRGLLLPAANQLHLGHAFFPPSQSLLEEIPSAPPNMPMDHRNQNESMLSGRGEADELPRPPVVNRREILQHPIFIFHIPFSRMNLPLKKTFTSLAVLRRRDRESHPRTTDSSNGMTGIHDFDTDLLIRRDEIQRIKAGNPDITHREAFSAAAKNFSFAMVPLSCLDFWGCFFQWAHFPHIHFGLMRDQAVKKTNVRQQEADDVLLKDGFFASANVGVSPILEEVVDNHEFLASGVLSAGKGVFKQCSTFMRTMDDRSAFFQTVLRS 327
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi8g00357 327 PANTHER PROTEIN YABBY 6-RELATED 18 126 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Busi8g00357 327 Pfam YABBY protein 190 217 IPR006780 GO:0007275(InterPro)
Busi8g00357 327 Pfam YABBY protein 18 74 IPR006780 GO:0007275(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi8g00357 K25796 plant-specific transcription factor YABBY family protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr7:6285780 Busi8g00357 Busi-Chr8:4994686 dispersed
Busi Busi-Chr12:30362897 Busi8g00357 Busi-Chr8:4994686 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Busi12g00644 . 15 229 C2C2-YABBY Transcription Factor family AT2G45190 52.308 5.88e-77 231.0
Busi13g00737 . 6 164 C2C2-YABBY Transcription Factor family AT2G26580 67.47 1.76e-76 224.0
Busi1g02276 . 1 169 C2C2-YABBY Transcription Factor family AT1G08465 66.474 8.01e-70 208.0
Busi3g00558 . 9 183 C2C2-YABBY Transcription Factor family AT1G23420 57.714 1.50e-57 179.0
Busi7g00622 . 6 164 C2C2-YABBY Transcription Factor family AT2G26580 69.182 4.08e-76 223.0
Busi8g00357 . 15 228 C2C2-YABBY Transcription Factor family AT2G45190 45.552 8.97e-60 189.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Busi YABBY 1.8e-28 CL0114 TF C2C2-YABBY