AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Busi8g00367 ATGATGCCAGGAATATCTGAGGCAAAAACCATAGCTTGGATCAAGCAGCTCTTGAATATTACACACTTCGTTCAACTGTTTCACACCTGTGCAAGTAGTCCGGATCCAATGGACGTGAAATCAAACCGTGTTGCTCCCGTTCTCACTAATCCTCCACCAGTAAACCAATCAATAATAGGCATTCATTCCAGTCTGTTAGCTTATTCACCACTGGGAGCAGCCTTCACTTCTCCATATCTAACAATTCCAAGGAAGAGACCTGGAAAAGTTGATGACATCCATTTCAAAGGTTGGCTCGATGCCATGAGAGCCTCTTCACCTCCTCGCAGGAAGATTTCCAATGATTTTAATGATAAAGATGTATCTGATAATATTGATGTTGCTTATAGCTCTTGGATGCTTGAGCATCCTTCAGCACTAGCATCTTTTGACCAAATAATAAGTCATGCAAAGGGCAAGAAGATAGCATTGTTTCTGGATTACGATGGGACTCTTTCACCAATTGTTGATGATCCTGATCGCGCCTTCATGTCAAACTCTATGCGTTCTGCTGTAAGAAATGTTGCAAAGTTTTTTCCAACAGCAATCGTTAGTGGAAGAAGCCGTGATAAGGGTAAGGAAGTAGATCTGTTCCAGCCTGCTAGAGAATTTTTACCTATGATTGATGAGGTTTTCAAGTCTCTTGTTAAGAATACTAAAGGAATTAAAGGAGCACAGGTTGAGAATAATAAGTTTTGTGTGTCTGTACATTATCGTAATGTAGATGAAAAGAATTGGATCACAATTGCACAATGTGTTTATAATATTATAAAGGAGTATCCTTGCCTGCGATTAACTCATGGACGGAAGGTTTTAGAGGTTCGTCCTGTGATTAACTGGGATAAAGGGAAAGCTGTTGAGTTTCTACTGGAATCACTCGGGTTGAGTAATTCTGATGAAGTAGTTCCCATATATATTGGAGATGACAGAACAGATGAGGATGCATTCAAGGTGCTGAGGGAGGGAAATAAAGGTTATGGCATCTTAGTATCTTCAGTGCCTAAAGAAAGCAATGCATGTTACACTCTCAGGGACCCATCAGAGGTCATGGAATTTCTCAAGGCCTTGGTGAGATGGAAGAAGCTGAGTGCATTGTAG 1137 40.72 MMPGISEAKTIAWIKQLLNITHFVQLFHTCASSPDPMDVKSNRVAPVLTNPPPVNQSIIGIHSSLLAYSPLGAAFTSPYLTIPRKRPGKVDDIHFKGWLDAMRASSPPRRKISNDFNDKDVSDNIDVAYSSWMLEHPSALASFDQIISHAKGKKIALFLDYDGTLSPIVDDPDRAFMSNSMRSAVRNVAKFFPTAIVSGRSRDKGKEVDLFQPAREFLPMIDEVFKSLVKNTKGIKGAQVENNKFCVSVHYRNVDEKNWITIAQCVYNIIKEYPCLRLTHGRKVLEVRPVINWDKGKAVEFLLESLGLSNSDEVVPIYIGDDRTDEDAFKVLREGNKGYGILVSSVPKESNACYTLRDPSEVMEFLKALVRWKKLSAL 378
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Busi8g00367 378 NCBIfam trehalose-phosphatase 214 371 IPR003337 GO:0005992(InterPro)
Busi8g00367 378 FunFam Trehalose 6-phosphate phosphatase 214 290 - -
Busi8g00367 378 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 205 376 IPR044651 GO:0004805(PANTHER)|GO:0004805(InterPro)|GO:0005992(PANTHER)|GO:0005992(InterPro)
Busi8g00367 378 Pfam Trehalose-phosphatase 158 204 IPR003337 GO:0005992(InterPro)
Busi8g00367 378 Pfam Trehalose-phosphatase 212 360 IPR003337 GO:0005992(InterPro)
Busi8g00367 378 FunFam Trehalose 6-phosphate phosphatase 220 378 - -
Busi8g00367 378 SUPERFAMILY HAD-like 156 373 IPR036412 -
Busi8g00367 378 Gene3D - 155 223 IPR023214 -
Busi8g00367 378 Gene3D - 226 377 IPR023214 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Busi8g00367 K01087 trehalose 6-phosphate phosphatase [EC:3.1.3.12]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Busi Busi-Chr8:5177054 Busi9g01284 Busi-Chr9:14478708 dispersed
Busi Busi-Chr8:5058695 Busi8g00367 Busi-Chr8:5177054 proximal
Busi Busi-Chr12:30186207 Busi8g00367 Busi-Chr8:5177054 wgd
Busi Busi-Chr5:34922762 Busi8g00367 Busi-Chr8:5177054 wgd